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15-4535-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10519 [Map]; Strand: w
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: -155; Region: promoter
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: -64; Region: promoter
    Flanking Genome Sequence: 15-4535-1 - 5-prime edge 
    CCTACCACAC CAAGAGTCGG GAGTGCGGAA ATTTTATTTT TATATTTTCT 
    GTTTTCTTTC CCCCCAAAAC CATCACCAAA AAACTAAAAA GTTAAAAGAC 
    GGCGGGAAAG TTGAAAACGA TTTGGGCCGA AATTAACTTT GGGCTTGGTT 
    TTAACGACAT AACGTCTCAA GACAAGTGAG TTAATGCCAC GGCCTTTTAT 
    TGAGGTAAAA AAGGCACGAA TGCTAACCGA AAATCGTTCC AAACAACAAT 
    TGCTTACGTG GACATTTTAA AACATCTGTT CAATGGTCAT TGGTGACTGA 
    CTTCAATGAA AATTACATTG CAACAATAGC CAAGTATCAC AGAAAGTTAC 
    ATTGCAACAA TTTCCACGTC AAATTTCTAA ACATGCAGAA CGGTAATTTA 
    CACGGGGAAG GCGCTGAGGA GGCGGAGGGT GCTACGGAGG GGATCGCAGG 
    AACACCGATG AATGAGAAGA ATCCAGAGGC GGCATGATCT TGCTCGTCGA 
    GGAGAGTGGA TGATGCTCTA TAAACGGCCA ACAATATGGT CGACGTACAC 
    CTAAAATGTC TTGCTACGTG GATGCACCAC TAAACCTTTC AACTTTTTTG 
    NGTTTTCTTT TCTTAATTAA ACACAAGATT AATTAGGAAA TTTTGTGTTT 
    CGTTCCGTTT CGTTTCNATT NCTGGTTCTT GTTTCTATTA CTCAAATTAT 
    TGC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10403 [Map]; Strand: w
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: -39; Region: promoter
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 15-4535-1 - 3-prime edge 
    GTGGTAGGCA ATTCTGAATC GCGAGGTTTA GTTCTCCGGC TGAATCAGAG 
    AACGACGAGT CGGAAAAATT CGAAACTCTA GAACTGAATA AATGTCGACG 
    TGGCAATTAT TTCCCGATTC CAGCGGCGAT GGTTTCCGGT GGGAAGTCGC 
    TGGCCGGATT CTTCAGTCCG TCTCGGATTC TACGCCAACC AAGGCGCTCG 
    AATCGACAGC TCCTCTACCT TCTATGGCCG ATCTCTTGCT CCAAGGTGAT 
    TCTTCGTTTC TTCCTTTTTT TGTCGAATCG TGTTTGTCAT GTGACTCAAA 
    GGAGATTGAA TTATTATTTG ATGCTTCAAG GATGCTCGAA GCT

AT4G00020.1

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00020.2

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 319 Blast hits to 211 proteins in 92 species: Archae - 0; Bacteria - 11; Metazoa - 140; Fungi - 22; Plants - 61; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link
InterPro Scan - TAIR