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15-4556-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 18850341 [Map]; Strand: c
      • AT2G45770.2 - [+] show detail - signal recognition particle receptor protein, chloroplast (FTSY)
        Distance: -875; Region: promoter
      • AT2G45770.1 - [+] show detail - signal recognition particle receptor protein, chloroplast (FTSY)
        Distance: -877; Region: promoter
    Flanking Genome Sequence: 15-4556-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TCGGCTGTTG GTGTACCAAA TATACGACAA ATGCGAAACA TAAGAGAAAA 
    AGATAAGTTA AACGTTATAC CTAAGGAAAC AAATTTGGAG TCTTCACTTT 
    TGGTCGTCCT CAGCAAACAA ATTTGGTGTA TATAATAATC AAAATAGGCG 
    AAGTCCTATA AATTGTTTGC CAACAAAATA TAAATTGTCA AACTAGTATT 
    CGCCACAAAT GCACTTTTGA GTTAAAATTG AATCACGTGT GAAGAAGTTG 
    TTGGACTTTG TTTACATCCT TTGGATCAAG TCTTAAAGTC GTTCTATGGA 
    CATTTGAGAA ATCTACGGGA AATAGAGGCA AAAGAAAAAG AAATCAAATA 
    TAGTAGTAGG TTTTAAAACA TACATACTTT GTACCAAAGC T

AT2G45770.1

Model type
Protein coding
Short Description
signal recognition particle receptor protein, chloroplast (FTSY)
Curator Summary
chloroplast SRP receptor homolog, alpha subunit CPFTSY. Required for LHCP integration into isolated thylakoids.
Computational Description
CPFTSY; FUNCTIONS IN: nucleoside-triphosphatase activity, GTP binding, nucleotide binding; INVOLVED IN: protein import into chloroplast thylakoid membrane, protein targeting, thylakoid membrane organization, photosynthetic electron transport in photosystem II; LOCATED IN: chloroplast, signal recognition particle, endoplasmic reticulum targeting, chloroplast thylakoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Signal recognition particle, SRP54 subunit, helical bundle (InterPro:IPR013822), Signal recognition particle, SRP54 subunit, GTPase (InterPro:IPR000897), Cell division transporter substrate-binding protein FtsY (InterPro:IPR004390); BEST Arabidopsis thaliana protein match is: chloroplast signal recognition particle 54 kDa subunit (TAIR:AT5G03940.1); Has 16847 Blast hits to 16846 proteins in 2926 species: Archae - 468; Bacteria - 10588; Metazoa - 346; Fungi - 290; Plants - 258; Viruses - 1; Other Eukaryotes - 4896 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G45770.2

Model type
Protein coding
Short Description
signal recognition particle receptor protein, chloroplast (FTSY)
Curator Summary
chloroplast SRP receptor homolog, alpha subunit CPFTSY. Required for LHCP integration into isolated thylakoids.
Computational Description
CPFTSY; FUNCTIONS IN: GTP binding; INVOLVED IN: protein import into chloroplast thylakoid membrane, protein targeting, thylakoid membrane organization, photosynthetic electron transport in photosystem II; LOCATED IN: chloroplast, signal recognition particle, endoplasmic reticulum targeting, chloroplast thylakoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Signal recognition particle, SRP54 subunit, helical bundle (InterPro:IPR013822), Signal recognition particle, SRP54 subunit, GTPase (InterPro:IPR000897), Cell division transporter substrate-binding protein FtsY (InterPro:IPR004390); BEST Arabidopsis thaliana protein match is: chloroplast signal recognition particle 54 kDa subunit (TAIR:AT5G03940.1).
Link
InterPro Scan - TAIR