Home
Mutant Lines
15-4634-1

15-4634-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 2; Position: 19630439 [Map]; Strand: w
  - AT2G47970.1 - [+] show detail - Nuclear pore localisation protein NPL4
    Distance: 0; Region: exon1 (CDS)
  - AT2G47970.2 - [+] show detail - Nuclear pore localisation protein NPL4
    Distance: 0; Region: exon1 (CDS)
  - AT2G47980.1 - [+] show detail - sister-chromatid cohesion protein 3
    Distance: -820; Region: promoter
Flanking Genome Sequence: 15-4634-1 - 5-prime edge
```
GNGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCCCT TTGTTGGTGT GAAGGATCTT AAGGAGGTAG 
ATAACGATTT CTTCCTCGTT CTCGTCAGGA TCTTGGATCA CCAGGTTCGT 
GTTTTTCTCT CTACCCTTCC TTTGCATCAA TCATCATTGT TCTTTGTACT 
AATGCTCTGC TTGGGCAAAT AAAGTAATTG AATCTGGAGC TTTTAAGTCT 
TAGGTTAATG AAGCT
```
3 prime edge [+] show sequence
1. Chromosome: 2; Position: 19630440 [Map]; Strand: w
  - AT2G47970.1 - [+] show detail - Nuclear pore localisation protein NPL4
    Distance: 0; Region: exon1 (CDS)
  - AT2G47970.2 - [+] show detail - Nuclear pore localisation protein NPL4
    Distance: 0; Region: exon1 (CDS)
  - AT2G47980.1 - [+] show detail - sister-chromatid cohesion protein 3
    Distance: -819; Region: promoter
Flanking Genome Sequence: 15-4634-1 - 3-prime edge
```
ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
AACAACCACC TCCTTCTTCA TCTTAGAGAG CTTTGGATCA TCGTCCGGCA 
TAATCTCCGT CTCGAACCAC TCTTCCTTGA ACAGCCTGAT GCACATATCA 
CTCATTTGAA ACGCCTCGAA ATGGACATCG GCGCCACCAT CCTCATTCAC 
CTCAAGCT
```

AT2G47970.1

Model type: Protein coding
Short Description: Nuclear pore localisation protein NPL4
Computational Description: Nuclear pore localisation protein NPL4; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPL4 (InterPro:IPR007717); BEST Arabidopsis thaliana protein match is: NPL4-like protein 1 (TAIR:AT3G63000.1); Has 392 Blast hits to 392 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 106; Plants - 67; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G47970.2

Model type: Protein coding
Short Description: Nuclear pore localisation protein NPL4
Computational Description: Nuclear pore localisation protein NPL4; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPL4 (InterPro:IPR007717); BEST Arabidopsis thaliana protein match is: NPL4-like protein 1 (TAIR:AT3G63000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G47980.1

Model type: Protein coding
Short Description: sister-chromatid cohesion protein 3
Curator Summary: Essential to the monopolar orientation of the kinetochores during meiosis.
Computational Description: sister-chromatid cohesion protein 3 (SCC3); FUNCTIONS IN: binding; INVOLVED IN: mitosis, attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation, meiotic sister chromatid cohesion, centromeric; LOCATED IN: chromosome, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), STAG (InterPro:IPR013721), Stromalin conservative domain (InterPro:IPR020839); Has 568 Blast hits to 559 proteins in 184 species: Archae - 0; Bacteria - 2; Metazoa - 324; Fungi - 134; Plants - 52; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).
Link: InterPro Scan - TAIR