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15-4657-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 5565940 [Map]; Strand: c
      • AT3G16400.1 - [+] show detail - nitrile specifier protein 1
        Distance: -146; Region: promoter
      • AT3G16400.2 - [+] show detail - nitrile specifier protein 1
        Distance: -427; Region: promoter
    Flanking Genome Sequence: 15-4657-1 - 5-prime edge
    GTGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC ATTTAACATA CTAGTATAAT GGTCTATGTT ATCTATGGAC
    CAAAAAATTA AATGGAGTAA AAATTCAGTA GAGAAAGACG ATTTTGAAAA
    TGAATCGAAG TGCATAATGG TGTCCTCTGC AACGAGTCAA ACGACAACNG
    GTGGAGGCAC TACATCAGTT GAACCGTGGC GTGGAGTTTT TGATTTAGAG
    AAAGCATTAT GCAGAATCAT AATTACGAAA AACAACGTGT GAATGGTTGA
    TCAGAAAGAA AAAAAACGAG GAAAAGGAAA AATTATTAGT ATTGTTTTTG
    AATAAAATAT AAAATATTGG GTTGATAGTT TTGTTAAAAG TTTGATATAG
    TTTCTACATT ATTTGGTTGA TATTTTTCCA TCTGATATAG TTTTACACCA
    AAAAAACAAA AAAAGTCTGA TATAGTGTAN ACCCGTTTTT TGTCTCCTCC
    TCAGCTGCTC TCGTATGAAT CATGCATAAA GCGCGTTTTC AACACATCCA
    TCCATCGTTA TTTATTACTC TACCTTCTAG TTTAATGTTG AACAGAAAAA
    AGAGAAGGTA AACTAAAAAG AGGAAAAAAA AANTTAAAAA AAAAAACNGG
    NCCANAAAAT TTTTCTTTNN GGGNAATTNG GGGGGAATTT TNTTTTTGNC
    CNNAANTTAA NTAAGGGNCC CCNGGGNNNA NAAANNAGGG GGATTTTTTN
    TTAAAAAGGG GTCNTTAAAA ANCNTNTTTT TNCNTTNC
  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 5468455 [Map]; Strand: w
      • AT3G16130.1 - [+] show detail - RHO guanyl-nucleotide exchange factor 13
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 15-4657-1 - 3-prime edge
    AGTATCGCCC CGCGGTTGGA CTTCTTGTGG TTCCAAGAGA TTCAAGATAA 
    GTAGTCTTCT TGTTGTTAGA CATGATCATG CTTGACACTC TGGTTAAAAG
    TTTCTTGTCG CTCTTTTCTT TCCTCGGTTC ATTGGTTTCG ATATTCCATT
    GCATTACCTC AGATAGTGAA ATGGTAGGCT TCTGCTTTTT AGGTCTATCT
    TCTAAAAGAC AAAAATTTGG CTCTTCTTCC TTCTCTGGAC TCTCTGTTTC
    CTTCACTATA TGGATCTTAC ACATCGCGAG CTCAGGGTTT TGTGTTAGCT
    GATCAGCTTC AAGAACATCT TCTATTCTTG ACATTACCGT GTGAGCCAAG
    CT

AT3G16130.1

Model type
Protein coding
Short Description
RHO guanyl-nucleotide exchange factor 13
Curator Summary
Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
Computational Description
RHO guanyl-nucleotide exchange factor 13 (ROPGEF13); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 11 (TAIR:AT1G52240.1); Has 315 Blast hits to 313 proteins in 20 species: Archae - 0; Bacteria - 4; Metazoa - 3; Fungi - 0; Plants - 304; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G16400.1

Model type
Protein coding
Short Description
nitrile specifier protein 1
Curator Summary
Encodes a nitrile-specifier protein NSP1 responsible for constitutive and herbivore-induced simple nitrile formation in rosette leaves. NSP1 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation.
Computational Description
nitrile specifier protein 1 (NSP1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: glucosinolate catabolic process, response to herbivore, nitrile biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: rosette leaf, cotyledon, guard cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Kelch repeat type 1 (InterPro:IPR006652), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Myrosinase-binding related, jacalin-like lectin (InterPro:IPR017388), Mannose-binding lectin (InterPro:IPR001229), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: nitrile specifier protein 4 (TAIR:AT3G16410.1); Has 12798 Blast hits to 6850 proteins in 422 species: Archae - 13; Bacteria - 486; Metazoa - 7547; Fungi - 708; Plants - 2515; Viruses - 41; Other Eukaryotes - 1488 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G16400.2

Model type
Protein coding
Short Description
nitrile specifier protein 1
Curator Summary
Encodes a nitrile-specifier protein NSP1 responsible for constitutive and herbivore-induced simple nitrile formation in rosette leaves. NSP1 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation.
Computational Description
MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-470 (ATMLP-470); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: glucosinolate catabolic process, response to herbivore, nitrile biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: rosette leaf, cotyledon, guard cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Kelch repeat type 1 (InterPro:IPR006652), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Myrosinase-binding related, jacalin-like lectin (InterPro:IPR017388), Mannose-binding lectin (InterPro:IPR001229), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: nitrile specifier protein 4 (TAIR:AT3G16410.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR