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15-4788-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20492416 [Map]; Strand: w
      • AT1G54950.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -1141; Region: intergenic
      • AT1G54955.1 - [+] show detail - transposable element gene
        Distance: -1333; Region: intergenic
    Flanking Genome Sequence: 15-4788-1 - 5-prime edge 
    GCNAGNATGA CTGGCGNNGA NAATATTGAT AAGATATGTT TTGTNAACAG 
    AGCAACCTCG TATTGGGAAA ATAAACAAGC GATGATATAT TTTAAGGGAC 
    GTTGTTTGNA CCGTATTTAT TTCTATCTTT CCATTNTTAC TAGGAGTGGG 
    CATTCAGGTA AGCGGGTCAG GTTTGGATAA AATCCGATCG AGTACGGGTT 
    TTTTGGGTAG AGAAGTTTAG GATC

AT1G54950.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07690.1); Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G54955.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G05145.1); similar to hypothetical protein 23.t00046 [Brassica oleracea] (GB:ABD65629.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446)
Link
InterPro Scan - TAIR