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15-4808-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 242588 [Map]; Strand: w
      • AT1G01660.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-4808-1 - 5-prime edge 
    CTTTGAAAAA CTAACAAAAT CGGTTATACG ATAACGGTCG GTACGGGATT 
    TTCCCATCCT ACTTTCATCC CATTGGCCAT GAGTTCCGCC ATTGATGTCC 
    TTTCTTTTCG CCTTCGTTTT CTATCTTTTT TTCTTCCCTG AAAACTGAAA 
    CCAGATAAAC AGAGAAGAAT CTAACAGAAA GAGACCAACA GTGGTTAGTG 
    GTGACCCTCA ATGTTCTTCT TGTTGACCGC TTCAGGTTTC GTGAGGGAGA 
    CACAGTAAAG TCAATGTGTG GCAATTAAAA TACAAGTCAA TGCATAAAAA 
    TACTAAACAA GAAACGGCAC TTTTTTCCAG TGAATAAAGG ACTTTTTATT 
    AGATTTTTCA CAAACAAATT CAATGAATCA CAGCACGATT AACACCACAT 
    TTATCCTAAT ACTAATAATC ACAGAATTAT GGATGCTGTT GCAACCAGTC 
    TTTAATGGCG GAACGAAGAA CAAGATTCGG GATGAGATTG CGATTCTCGA 
    GCCTAAGATT TGTCATTGGT GATTTTTCAC CTCCGTGATT GAGCCATCTT 
    CTGAACTCAT CTGCTTCATA GGTGTAACCA TCGGCTGCAA CATGAGGATT 
    TTGCATAATA TCCTACATTT CACGAGCAAT GGCATGAAAA ATAGTTAGAC 
    TGCAGATCAN CAGCAGATAT CAAAATGGAA AGATANGNTA TNAAAAAAAA 
    AAAANNGNGT TNGNNTTAAA ANATTTNNAA GANTAAAAAC ANNNNNNGNG 
    GGGNNATNTN NTNAAAAN

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 242585 [Map]; Strand: w
      • AT1G01660.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-4808-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCA 
    TGCAATGATG TTGTTCATGT TGCAGTGAAG AGTGATGTCA GAGAGAGCAG 
    ATCAACTCTT CTTTGGGCTT TGAGGAACCT CGGGGCTAAG AAAGTCTGCA 
    TCCTCCATGT TTATCAGCCA AAAACAGCTT CTCCGGCTGG TAAGCT

AT1G01660.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT2G45910.1); Has 73160 Blast hits to 42540 proteins in 2253 species: Archae - 866; Bacteria - 9091; Metazoa - 34168; Fungi - 4977; Plants - 4797; Viruses - 224; Other Eukaryotes - 19037 (source: NCBI BLink).
Link
InterPro Scan - TAIR