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15-4816-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9733765 [Map]; Strand: c
      • AT1G27940.1 - [+] show detail - P-glycoprotein 13
        Distance: 0; Region: exon9 (CDS)
    Flanking Genome Sequence: 15-4816-1 - 5-prime edge 
    GATGAGGCAA CAAGTGCTCT GGACACGAGC TCGGAGAAAC TAGTCCAAGA 
    GGCGCTAGAC AAGCTAATGA AGGGACGAAC CACGGTATTG GTGGCTCATA 
    GGCTGTCGAC CATAAGAAAA GCAGATACGA TCGCTGTGTT GCGTAAGGGA 
    AGGGTTGTAG AGAAAGGAAG TCATAGAGAG CTTGTTTCAA TACCTAATGG 
    GTTTTATAAG CAATTGACGA GTCTTCAAGA AGTGCTGTGA CTCGTGATCT 
    TTGAAGTCTC TTTCGCTTTA AATTTTAAAA AAACTAATAT ATACTCATAG 
    AAACTACATA TGATAATATT ATAAGATTGT GTCAGGAATA TCTGGACACA 
    AAAAACATTT GTAAACTTTT AAGGAAAAAA TGAATAGCAG AAAATGTGTC 
    TTATTGGCTC TTTAACATAT GTGTATTTCA AAATCAATTT ACAAAATCGA 
    TGTTCATGTA CCGGACGAAT GTGATCCTTG TAATTTAAAA TCTGGATCTT 
    TAATTACGCG GAAAAAAACA AGCATAGATA CACATTTCAT GCAATACATT 
    ACCGCATATA TGAATTTTTT TTGAGTTATA CACAATTCAT AAACGTGTTT 
    TTCTATCACG TCGNTAATNA TTNGAGTTAT GTTATNATTT CAATATTTGG 
    AAACTTTTAG TGACAAAATT TTTTTTNACT CCCTAATTTN NNAAANAATT 
    TACCCCAAAA AA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9733830 [Map]; Strand: c
      • AT1G27940.1 - [+] show detail - P-glycoprotein 13
        Distance: 0; Region: exon9 (CDS)
    Flanking Genome Sequence: 15-4816-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    GCCCTCATCA AGGAGAAGCA CTGAAGGGTC CTTTAAAACC GCCCTCGCGA 
    TAGCCACTCT CTGTTTCTGC CCACCTGATA ATTGTACTCC CTTATCACCC 
    ACGTGCAGTT TTGTACCCTT CTTCCATCTT GATAATGAAC TCGTGCGCAT 
    TCGCCGCTTT CGCAGCTTCC ATGATCTCTG CCTCCGATGC GTTTTCATTG 
    CCATACTTAA TGTTTTCGTA TATGGTTGTT GAAAAGAGAG ACGGTTCTTG 
    TTGAACTAAA GCTAGCTTCT TGCGCAAGCT ACGTAGGTTT AGGGTTTTTA 
    TGTCCTGCCC ATCGATGCAA AGATTGCCGT TGCTCGGATC GTAGAATCTC 
    ATGATCAGTC CGATCACCGT GCTCTTTCCC GAACCACTAG GTCCTACGAC 
    CGCAAGACTT TTCCCGGCTG AAACTCGGAG GTTTAGGTTT TTGAAAATGT 
    CAATTTCGGG TCTTGTGGGA TACACAAAAC TCACGTTTCT AAACTCTATA 
    TCTCCTTTGA CTTGACTAAC CATTCTTGAG TTAGGCTGGT CTGGAGATAT 
    CTTGGTCTCT CTATGTAAAA CCCTGAAAAC TGACCCGAGT GCTTGCGTGC 
    CCTTCACGAT ATCTGGGGTC AAAGCAAGCG TTTCCGAAAC TGAGAAAGCT 
    GTGACNATCA ACACCTGAAG GATTTGAACT ATCCCAAAAT TCGCTNCTTA 
    TGATGGATCA AAACCGATAC NTNCCA

AT1G27940.1

Model type
Protein coding
Short Description
P-glycoprotein 13
Computational Description
P-glycoprotein 13 (PGP13); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 14 (TAIR:AT1G28010.1); Has 859453 Blast hits to 396267 proteins in 4182 species: Archae - 14855; Bacteria - 669138; Metazoa - 18079; Fungi - 12603; Plants - 9342; Viruses - 61; Other Eukaryotes - 135375 (source: NCBI BLink).
Link
InterPro Scan - TAIR