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15-4819-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22610799 [Map]; Strand: w
      • AT3G61090.1 - [+] show detail - Putative endonuclease or glycosyl hydrolase
        Distance: -977; Region: promoter
      • AT3G61100.1 - [+] show detail - Putative endonuclease or glycosyl hydrolase
        Distance: 0; Region: exon3 (CDS)
      • AT3G61105.1 - [+] show detail - pre-tRNA
        Distance: -611; Region: promoter
      • AT3G61110.1 - [+] show detail - ribosomal protein S27
        Distance: -835; Region: promoter
    Flanking Genome Sequence: 15-4819-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATGCA 
    TTGGACAATG ATGAATCAGA TTTGATGGTG ATCTCACGAG TCAACTCGAA 
    GTTCGCCACT TATCTCGCAG ATTGGAAAGC CAAAGACTTG TACATTTTCG 
    GAGCAGAGCC AGAAAAAGCA CCAGGGAAAT GTAGCAACNT GCAAAGTTAC 
    GAGTTTGGAC GAGCTTTTCA CTCAACAATG GGTTTGGGAA AGCCTATCAC 
    TTGGAGGAGA CCCTATCACC CGAGCTTAGT TAGTTATTCA TCGTTTCAAT 
    CGATTGTGAA TT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22610875 [Map]; Strand: w
      • AT3G61100.1 - [+] show detail - Putative endonuclease or glycosyl hydrolase
        Distance: 0; Region: intron2 (CDS)
      • AT3G61105.1 - [+] show detail - pre-tRNA
        Distance: -535; Region: promoter
      • AT3G61110.1 - [+] show detail - ribosomal protein S27
        Distance: -759; Region: promoter
    Flanking Genome Sequence: 15-4819-1 - 5-prime edge 
    CCCATTTATC AATATCCTTC ACCATCCTAT TATATCTCGC ATTTGCATCT 
    CCTGAAAACC ATAGTTATAT CAATGGAGAT ATCTAAGACA ACTAAGGGGA 
    GTGAGTAGTG TTAAAGAGGG AGAGGAAATG ATCACCNTGC GGGTACGAAC 
    ATGATATTAG CGAGGAGAAA CTCATCCTTG AACTCATGAT TCTTCTTACC 
    GTAAACCCTG ATTGACACAT TACAAGGAAG ATAACCCTGT CTATCTAGAG 
    CTGATTCGAT ATTCTCAGAA ACCTCAGAAG GCTCGAGATC ATCAGGGAGT 
    GGGCATTCTA CGACGTCCCA GAAGACGACT ACCTTATCCT CTTCCTCTAG 
    ATACAAAAAA GGCGGCAAAA TGCATTAACA ATCAGTATCC AGAGAATTAC 
    TATTGATTTG TTCCTCCACA TACTATTAGA GAGATAGAGA GAGAGAGAGC 
    TAACCAGTGG TCATGGTTTC GACCAACACC CGAGAAATCA GGGTTTTAGA 
    TCTGCGGCGG TGGAAGAGCG AGCTCTCTCT TGGTTTGGTT GGGTTTAAAA 
    AGAAATGGTC CGGAAACTTT GGTTTACTAA TTTAGAAATC GAAACAGAGC 
    AACAAAAGTT GATATGGCCG ANTTGGTCTA GGCGCCANAT TAAGGTTCTG 
    GTCCGAANGG CGNGGGTTCA AATCCCCTGT CAACAATTTA CTTTTTTGTC

AT3G61090.1

Model type
Protein coding
Short Description
Putative endonuclease or glycosyl hydrolase
Computational Description
Putative endonuclease or glycosyl hydrolase; BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT3G61100.1); Has 176 Blast hits to 170 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 176; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G61100.1

Model type
Protein coding
Short Description
Putative endonuclease or glycosyl hydrolase
Computational Description
Putative endonuclease or glycosyl hydrolase; BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT3G61090.1); Has 98 Blast hits to 98 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G61105.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Leu (anticodon: AAG)
Link
InterPro Scan - TAIR

AT3G61110.1

Model type
Protein coding
Short Description
ribosomal protein S27
Curator Summary
Arabidopsis ribosomal protein
Computational Description
ribosomal protein S27 (RS27A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein, zinc-binding domain (InterPro:IPR011332), Ribosomal protein S27e (InterPro:IPR000592); BEST Arabidopsis thaliana protein match is: Zinc-binding ribosomal protein family protein (TAIR:AT2G45710.1); Has 1035 Blast hits to 1035 proteins in 379 species: Archae - 136; Bacteria - 0; Metazoa - 447; Fungi - 151; Plants - 149; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).
Link
InterPro Scan - TAIR