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15-5006-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1717740 [Map]; Strand: c
      • AT5G05720.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 15-5006-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCC TCATCAGCAC CATCGGGCGA GACCTGATCG 
    TTGCCGGTGG ACACATATCA TTGGACCAGG TTTTCAACTT ATTATTAAGC 
    TCAAGAAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1717740 [Map]; Strand: c
      • AT5G05720.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 15-5006-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    ATGAGCCTAA CAAAGCGAAA ATATCATTAT TAGATTCTAA AAAGACTAGA 
    AAGATTAAAG TTGTTGCTCT CGTTGGTGAT GATGTTTCTG ATATGGAATA 
    CTACAAGAGT CGGACAAAGA AAAATCTGTC GGATTCGGAC AGTGATTGTG 
    AAACTTATGG TTGTGAAGAT GCAATTCATG TTTTTCCTAT TGATGGGGAT 
    ATTGAAGCTG ACAGAGTTGA CAAAGAGTTT ACAATTCATG TTTTCGGATT 
    CGGACATCAG GATGTTTAAT TTGGATGGTG TTGCAGGGCA ATGGAGAAAT 
    TAGATAAATT ACCTTTCCAG GGGGGGACGT TGCATATTTC ACCAGCTAAG 
    CCCCGTGATT ATGGAGACCA AAGAAGCACT TTACTTTTAA CGAATAGGTG 
    ATTATTCCCT AACCTGTTCT TACTTGACTT TTCAGGTTGT TTTCCTTGAA 
    CCGATTGAGG CACNTGAAGC TCTGAANGGA ATGGGCCGTA CAAGCGTTAC 
    AAGTAAGCT

AT5G05720.1

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: nucleotide binding;nucleic acid binding;RNA binding (TAIR:AT4G19610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR