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Mutant Lines
15-5162-1

15-5162-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 3; Position: 23427429 [Map]; Strand: c
- AT3G63450.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: 0; Region: exon7 (CDS)
- AT3G63450.2 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: 0; Region: exon7 (CDS)
- AT3G63450.3 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: 0; Region: exon7 (CDS)

GNGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCCCT AAGGATGATA GGCTGGTGGA TAGCCCAATT 
GTATCACCGA AACACCATTT TCTCGAGTGT GGGGTAGCTG CAGAAACAAA 
GGGTTCAGGC TTGTCGTCGC CATCTTTTGA TCAGGATGAG TCTAGTACAG 
GTACATTGAA AGAGCCTCTC AAGTCCTTGA AGTGCCAAAT GCCGAGGTTA 
TCAATGATGG GGATAACACA GGGCAGCAGC GGACCAACAA CGTGTCGCGT 
TGGGATCTAA ACCCATTCAA AACAGCTAAC CAGTGGTAGG TAGGTAGTCT 
GATGAGAGGA GTAAATTTGG TTATAGTGTG ATATGGATAT GGAAGAGATT 
TGTATCGCAA TGTAAAAAAG TCATTTGGCA TGTCATTGCA GGAAGAGAAG 
ATTAACCAAA AAAAAGGAAA AAAGGTGAAN AGCAATTAGG GAGACGTGGA 
TGTAAGATAG ATAGAGAANA AGATGGGGGG AAGGTTGGTT GTTGTACCAT 
TCATTAAACA AGAGTGTTAG TAAATGAGTC CCGTGAATGT TATGCAATGG 
ACCACTCCCC ACAGGTGACC TTAATATTAA TTATATCATA TATAAAAAAA 
GCACAAGAAG AGATTGATTA TTCACCANAA AAANAAAGGT NGGTTNGCCT 
ATTTTTTTGT TNGTATTCAA TCACTATATA TTTATCTAAG TTAAGTNGGA 
ATTACTTTGA GGGAACATNA TNTTTNTTAC CT

3 prime edge [+] show sequence

Chromosome: 3; Position: 23427452 [Map]; Strand: c
- AT3G63450.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: 0; Region: intron6 (CDS)
- AT3G63450.2 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: 0; Region: intron6 (CDS)
- AT3G63450.3 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: 0; Region: intron6 (CDS)

ATGAAAACGG TAGAGGTAGA GGATGATCCT CCAAGCTGAA CAACGGCAAA 
CAAAAAGACA AAAAATACTC AGATCTTCTT CAAGCTCACA AAATGAACGA 
TTATCAAACT GGGGATACCT CTCTGGAAGT TTGATTGTAT CCTCATCATT 
CTCTTTTGTG CACACTCTCT GATTGTTTGA AACTGCCAGC AGAGAGCGAT 
CAGGTTATTA CACATTTCAG ACAAGCATAA ATCACTTACT CGGACCAAAA 
CCGAACCTAG TCGTGGAGAA ACAAGTAGTG TTTGGTCGAA ATTGAGTTGA 
AACTGTTTCT CGACGTCGAG AAGCTGCAGA TTCATCAGCC TTGTGCTCTG 
CAGCTCAAGA GCTCGTTCTT CAAACCTCCT TTTCCACAGC AGATCTTCAT 
GAAAAG

AT3G63450.1

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G51950.2); Has 366 Blast hits to 230 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 0; Plants - 313; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G63450.2

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G51950.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G63450.3

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G51950.2).
Link: InterPro Scan - TAIR