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15-5166-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 227748 [Map]; Strand: c
      • AT4G00500.1 - [+] show detail - alpha/beta-Hydrolases superfamily protein
        Distance: -352; Region: promoter
      • AT4G00500.2 - [+] show detail - alpha/beta-Hydrolases superfamily protein
        Distance: -553; Region: promoter
      • AT4G00520.2 - [+] show detail - Acyl-CoA thioesterase family protein
        Distance: 0; Region: intron1 (CDS)
      • AT4G00520.3 - [+] show detail - Acyl-CoA thioesterase family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 15-5166-1 - 5-prime edge 
    GGGNNAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCTG AGAATTACCT GATTCAGTGT TCATGACGGT 
    GTAGAGACTG TCGAAACGTT GGCCGGCAAA TTCAATCATT CAACTAAAAA 
    TCTGCTGACC AAACAAATAA AAAATGCAAC GAGGTAATTA TCCAGTACCC 
    TTGGGTATAC GATAGAGTCT GTGGACACCG CTCAGATGCA GTGCTGACAA 
    ATTTAATGGG CCTATAGCTA AAAGCCCAAA TTTGTTGGTC CTAAATCCTA 
    ATACGCTGTC CTATAGAAAA CAAAAGTTTC TTCTACACTC AGCACAGATC 
    CGACCCGACC CGACCCGACC CGACAGCTTC CGAAGACGAA ATTTCTACAT 
    TGCACGTCTT TCTCCGCTAG TCTCGAGGAT GCTAATGGAA TCTTTCGAGC 
    ATCTATGGTG ACTGGTGAGT AGATTCTTCT TGCCCACAAG TTTCTTTCAT 
    TGTTTCGTCT TTACGAACTA TGGTTGACTT GAACATTTCG TAGATAACAA 
    ATTCAACTTG TCTTCTCTCT CTGTAATTCG TGTCTTCTTC AGCGCCAAAA 
    GAAATCACTT GATTGTTAAA AATTCTTCTT TTTTTATTTT AAAGTAGTTG 
    GTGGTGGTTT CGGACACAAA TCTTGGAACA CAAGCT

AT4G00500.1

Model type
Protein coding
Short Description
alpha/beta-Hydrolases superfamily protein
Computational Description
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: triglyceride lipase activity, calmodulin binding; INVOLVED IN: lipid catabolic process, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921), Mono-/di-acylglycerol lipase, N-terminal (InterPro:IPR005592); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G49050.1); Has 561 Blast hits to 561 proteins in 134 species: Archae - 0; Bacteria - 2; Metazoa - 171; Fungi - 76; Plants - 213; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00500.2

Model type
Protein coding
Short Description
alpha/beta-Hydrolases superfamily protein
Computational Description
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: triglyceride lipase activity, calmodulin binding; INVOLVED IN: lipid catabolic process, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921), Mono-/di-acylglycerol lipase, N-terminal (InterPro:IPR005592); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G49050.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00520.2

Model type
Protein coding
Short Description
Acyl-CoA thioesterase family protein
Computational Description
Acyl-CoA thioesterase family protein; FUNCTIONS IN: acyl-CoA thioesterase activity; INVOLVED IN: acyl-CoA metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Acyl-CoA thioesterase (InterPro:IPR003703), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: Acyl-CoA thioesterase family protein (TAIR:AT1G01710.1); Has 3429 Blast hits to 3402 proteins in 976 species: Archae - 0; Bacteria - 1910; Metazoa - 393; Fungi - 300; Plants - 65; Viruses - 0; Other Eukaryotes - 761 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00520.3

Model type
Protein coding
Short Description
Acyl-CoA thioesterase family protein
Computational Description
Acyl-CoA thioesterase family protein; FUNCTIONS IN: acyl-CoA thioesterase activity; INVOLVED IN: acyl-CoA metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Acyl-CoA thioesterase (InterPro:IPR003703), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: Acyl-CoA thioesterase family protein (TAIR:AT1G01710.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR