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15-5176-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7102421 [Map]; Strand: w
      • AT1G20500.1 - [+] show detail - AMP-dependent synthetase and ligase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-5176-1 - 5-prime edge 
    CTCCTGGTAA ACTTCGTCGT CGGTGAGAAC GACGGAGATA GCGACGGGGA 
    GTTTTGGTGC CAGCTGGCGC GTAGTGAAGA CGAGAGTTGG ATTACTGTCG 
    GCAATCTGTT TGGAGATTTC ACCGGAAGTA TTGAGAGTGT TTGCGGTGGT 
    GAAAACGGCG CCGAGAGACA TGACGGAGAG GCAAACAACG GGAATGTAGA 
    TGGAGTTTGG AGAAAGGATG AGGACGACGT CGCCTCTTCG TATTCCGACT 
    TCATGATATA GACAGTCGGC GACGCGATCG ACGGCTCTCC AGAGATCGGA 
    GAAGGTTAAG CACTGGCCTG TGGCAGCGTC GATAAAGGCG GTTTTGCCAC 
    GGTGTGGCTG AGAGGAGATG AATGTGGTGA CGTCAAGCGA AAGATTTGGC 
    GGGAGACTTA ATGGTTGGCG CTTGCTATAG AATGTAGAGT TTGATTTGCA 
    GAAACCACTT CTAGGATCAA CAATGAGAGA TCTCTCAGGA TACGCCATTT 
    TTTCTCTATA CGAGTACAAC AGATCCAGAG GATGAATTTA AAGAGTGGTT 
    AATACAAATT TATTTTTGTT TCTTTTCCCG AAGAGTGCTA AAATGCATGT 
    CGAGTAGATA AAGAGTCGTT TATTTTGATG AAAACAGCTA TCACTGAAAA 
    CTTCACATAG TANTGAAAAC GATAAACCCT TTTACCCGGA AAATTAAATA 
    GCTTTCAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7102305 [Map]; Strand: w
      • AT1G20500.1 - [+] show detail - AMP-dependent synthetase and ligase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-5176-1 - 3-prime edge 
    ACCAGGAGCT CACTAGCGCA ATCAGAGTCG TTGGGATTTT AAGCGAGATG 
    GTGAAGAAAG AACCGAGTGG GCAACGAGTC AGGGACCGAG TCAACCAGGA 
    CGACACGGCG ATGATGCTTT ACTCGTCGGG AACCACGGGA CCGAGCAAAG 
    GAGTGATCTC GTCTCACCGG AATTTAACAG CTCACGTGGC TAGATTCATA 
    TCGGATAATT TGAAACGAGA CGATATTTTC ATCTGTACCG TCCCGATGTT 
    CCACACCTAC GGTTTATTGA CCTTCGCTAT GGGCACCGTA GTATTGGGTT 
    TGACGGTGGT GATCCTCCGG AGATTTCAGC TCCACGATAT GATGGATGCG 
    GTGGAGAAAC ACCGAGCCAC GGCTCTGGCT TTGGCGCCAC CTGTTTTGGT 
    AGCTATGATT AACGAAGCAG ATCTGATCAA GGCTAAGTAC GATCTGAGCT 
    CACTAAAAAC GGTAAGGTGT GGTGGAGCGC CGTTGAGCAA GGAGGTGACA 
    GAAGGGTTTC TAGAGAAATA TCCGACGGTT GATATTCTGC AAGGGTATGC 
    TTTGACGGAA TCCAACGGCG GAGGGGCTTT CACGAATT

AT1G20500.1

Model type
Protein coding
Short Description
AMP-dependent synthetase and ligase family protein
Computational Description
AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: phenylpropanoid metabolic process, metabolic process; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT5G38120.1); Has 82776 Blast hits to 75503 proteins in 3739 species: Archae - 1179; Bacteria - 53477; Metazoa - 3434; Fungi - 4583; Plants - 2754; Viruses - 1; Other Eukaryotes - 17348 (source: NCBI BLink).
Link
InterPro Scan - TAIR