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15-5206-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25233081 [Map]; Strand: w
      • AT1G67340.1 - [+] show detail - HCP-like superfamily protein with MYND-type zinc finger
        Distance: 1241; Region: intergenic
      • AT1G67350.1 - [+] show detail - unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bac...
        Distance: -2190; Region: intergenic
    Flanking Genome Sequence: 15-5206-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TTTAGTTGAG TTCACCGTCA TTCGATGGAA GAAAATAGAA ATTTTACCGG 
    TAGAGTATAT GATTCATATA CATATCTAAA TTTGTCTGGA AGGCTTTGTA 
    ATTTATGATT GGTTTTGTTT TACTCTCATT AGTTAATTAC TTGGGTTATT 
    TATATTTTAT TTTTTTGGGG TCAAAACGAA TTGTTAAATT TATAATTTCC 
    TGTAAAATTA TTTGCCTAAC CTTTAATTTT TACTAACCCC TAATTCTTTT 
    CTAATCCATT TTACTAACAT TTTCGTTTTT ATCTAGACCA TTAGATTGAG 
    TAACAAGAAC AATCGGAAAT AAAGGAGAAC ACTAACATTC TTTAAGAAAA 
    CTTGACCAAC GGTTACAAGC GTAACAAAAC TTTAAGGGGG CATGGGAAAT 
    AGGTGAAGTT TAAGTTACCA CCATCAACAG ATAGTAAGTG TAACCCATTC 
    AATTATCCGG AGGCAAACTT GGAACTCGAG ATTCGCTTCT TCGGTTGTGA 
    AGTTAACCTC GCATGGAAGG ATGAGAAACT TGAAGACTGC CTTGCACTAA 
    TACTTACTAA GAAAGAAGGA CAAATAATGA TCTANAAGTG TTCATGGACT 
    GATGGACCTG ANAAAGATGT ACATATTTCT ATGAATGGAC GCTTTGCAAG 
    GCCTACCTCA GGTCAAATAA GTATGCCTCC AAGGCTTGAA GATCGGGGAA 
    ATTTCACATA CNCNTATTTG GAAGCTCTAT G

AT1G67340.1

Model type
Protein coding
Short Description
HCP-like superfamily protein with MYND-type zinc finger
Computational Description
HCP-like superfamily protein with MYND-type zinc finger; FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: HCP-like superfamily protein with MYND-type zinc finger (TAIR:AT5G50450.1); Has 623 Blast hits to 604 proteins in 167 species: Archae - 0; Bacteria - 161; Metazoa - 77; Fungi - 145; Plants - 151; Viruses - 2; Other Eukaryotes - 87 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G67350.1

Model type
Protein coding
Computational Description
unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR