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15-5219-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 9030406 [Map]; Strand: w
      • AT3G24730.1 - [+] show detail - mRNA splicing factor, thioredoxin-like U5 snRNP
        Distance: 0; Region: exon3 (CDS)
      • AT3G24740.2 - [+] show detail - Protein of unknown function (DUF1644)
        Distance: -690; Region: promoter
      • AT3G24740.1 - [+] show detail - Protein of unknown function (DUF1644)
        Distance: -691; Region: promoter
    Flanking Genome Sequence: 15-5219-1 - 3-prime edge 
    AATGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC 
    CGGGATCATA CTAAATGGGT TGGTGCATTT CATATAAAAC AAGACTTTAT 
    TGATGTTGTT GAGGTAACAA GAACAATTCA ATTTCATTAA TTCCTAAAAG 
    CT

AT3G24730.1

Model type
Protein coding
Short Description
mRNA splicing factor, thioredoxin-like U5 snRNP
Computational Description
mRNA splicing factor, thioredoxin-like U5 snRNP; FUNCTIONS IN: catalytic activity; INVOLVED IN: mitosis; LOCATED IN: spliceosomal complex; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), mRNA splicing factor, thioredoxin-like U5 snRNP (InterPro:IPR004123), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: mRNA splicing factor, thioredoxin-like U5 snRNP (TAIR:AT5G08290.1); Has 535 Blast hits to 535 proteins in 209 species: Archae - 0; Bacteria - 0; Metazoa - 213; Fungi - 146; Plants - 109; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G24740.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1644)
Computational Description
Protein of unknown function (DUF1644); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1644) (TAIR:AT1G68140.3); Has 253 Blast hits to 248 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 253; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G24740.2

Model type
Protein coding
Short Description
Protein of unknown function (DUF1644)
Computational Description
Protein of unknown function (DUF1644); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1644) (TAIR:AT1G68140.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR