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15-5220-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8789253 [Map]; Strand: c
      • AT1G24909.1 - [+] show detail - Glutamine amidotransferase type 1 family protein
        Distance: -1339; Region: intergenic
      • AT1G24938.1 - [+] show detail - transposable element gene
        Distance: 123; Region: intergenic
    2. Chromosome: 1; Position: 8811782 [Map]; Strand: c
      • AT1G25083.1 - [+] show detail - Glutamine amidotransferase type 1 family protein
        Distance: -1339; Region: intergenic
      • AT1G25097.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 123; Region: intergenic
    Flanking Genome Sequence: 15-5220-1 - 5-prime edge 
    GTGTTATCAA ANNGGCAGNN GTGCACATTG CTGAAAGTTA ATCAATGGTC 
    AGACTGTAAA GTTAATTTCC TTATGTCTAT GAAGAAAACA AAAATTTAAT 
    CCACCTTTTT GGGATATTAT TTTGTTGATC AGAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8774990 [Map]; Strand: c
      • AT1G24880.1 - [+] show detail - UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
        Distance: -911; Region: promoter
      • AT1G24880.2 - [+] show detail - UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
        Distance: -911; Region: promoter
      • AT1G24880.3 - [+] show detail - UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
        Distance: -911; Region: promoter
    2. Chromosome: 1; Position: 8789369 [Map]; Strand: c
      • AT1G24909.1 - [+] show detail - Glutamine amidotransferase type 1 family protein
        Distance: -1455; Region: intergenic
      • AT1G24938.1 - [+] show detail - transposable element gene
        Distance: 7; Region: intergenic
    3. Chromosome: 1; Position: 8811898 [Map]; Strand: c
      • AT1G25098.2 - [+] show detail - other RNA
        Distance: -913; Region: promoter
      • AT1G25098.1 - [+] show detail - other RNA
        Distance: -924; Region: promoter
    4. Chromosome: 1; Position: 8826276 [Map]; Strand: c
      • AT1G25155.1 - [+] show detail - Glutamine amidotransferase type 1 family protein
        Distance: -1455; Region: intergenic
      • AT1G25175.1 - [+] show detail - other RNA
        Distance: -1010; Region: intergenic
    Flanking Genome Sequence: 15-5220-1 - 3-prime edge 
    GATAACACCA TAGTTTAAGA TGCCAAAAAA ACAAAGGAAG ATGGAGCGAG 
    AAAGATGAAT TACGCTATAG GAATTGATTT TCCTCTTAAG TGCTCAAGTC 
    TCACTTTAAA TTCAACTATC ACGGATGAGC CAAATG

AT1G24880.1

Model type
Protein coding
Short Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
Computational Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; CONTAINS InterPro DOMAIN/s: UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (TAIR:AT1G25054.1); Has 5321 Blast hits to 5321 proteins in 1417 species: Archae - 0; Bacteria - 2995; Metazoa - 1; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 2270 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G24880.2

Model type
Protein coding
Short Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
Computational Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein; BEST Arabidopsis thaliana protein match is: UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (TAIR:AT1G25054.1).
Link
InterPro Scan - TAIR

AT1G24880.3

Model type
Protein coding
Short Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
Computational Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein; BEST Arabidopsis thaliana protein match is: UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (TAIR:AT1G25054.1).
Link
InterPro Scan - TAIR

AT1G24909.1

Model type
Protein coding
Short Description
Glutamine amidotransferase type 1 family protein
Computational Description
Glutamine amidotransferase type 1 family protein; FUNCTIONS IN: catalytic activity, anthranilate synthase activity; INVOLVED IN: glutamine metabolic process, biosynthetic process, metabolic process; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), Anthranilate synthase, glutamine amidotransferase domain (InterPro:IPR006221), Carbamoyl phosphate synthase, GATase domain (InterPro:IPR001317), Glutamine amidotransferase type 1 (InterPro:IPR017926), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); BEST Arabidopsis thaliana protein match is: Glutamine amidotransferase type 1 family protein (TAIR:AT1G25083.1); Has 23967 Blast hits to 23967 proteins in 3339 species: Archae - 582; Bacteria - 15663; Metazoa - 561; Fungi - 667; Plants - 197; Viruses - 0; Other Eukaryotes - 6297 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G24938.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35100.1)
Link
InterPro Scan - TAIR

AT1G25083.1

Model type
Protein coding
Short Description
Glutamine amidotransferase type 1 family protein
Computational Description
Glutamine amidotransferase type 1 family protein; FUNCTIONS IN: catalytic activity, anthranilate synthase activity; INVOLVED IN: glutamine metabolic process, biosynthetic process, metabolic process; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), Anthranilate synthase, glutamine amidotransferase domain (InterPro:IPR006221), Carbamoyl phosphate synthase, GATase domain (InterPro:IPR001317), Glutamine amidotransferase type 1 (InterPro:IPR017926), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); BEST Arabidopsis thaliana protein match is: Glutamine amidotransferase type 1 family protein (TAIR:AT1G24909.1); Has 23967 Blast hits to 23967 proteins in 3339 species: Archae - 582; Bacteria - 15663; Metazoa - 561; Fungi - 667; Plants - 197; Viruses - 0; Other Eukaryotes - 6297 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25097.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24822.1); Has 12 Blast hits to 12 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25098.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT1G25097
Link
InterPro Scan - TAIR

AT1G25098.2

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT1G25097
Link
InterPro Scan - TAIR

AT1G25155.1

Model type
Protein coding
Short Description
Glutamine amidotransferase type 1 family protein
Computational Description
Glutamine amidotransferase type 1 family protein; FUNCTIONS IN: catalytic activity, anthranilate synthase activity; INVOLVED IN: glutamine metabolic process, biosynthetic process, metabolic process; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), Anthranilate synthase, glutamine amidotransferase domain (InterPro:IPR006221), Carbamoyl phosphate synthase, GATase domain (InterPro:IPR001317), Glutamine amidotransferase type 1 (InterPro:IPR017926), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); BEST Arabidopsis thaliana protein match is: Glutamine amidotransferase type 1 family protein (TAIR:AT1G24909.1); Has 23967 Blast hits to 23967 proteins in 3339 species: Archae - 582; Bacteria - 15663; Metazoa - 561; Fungi - 667; Plants - 197; Viruses - 0; Other Eukaryotes - 6297 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25175.1

Model type
Other RNA
Short Description
other RNA
Link
InterPro Scan - TAIR