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Mutant Lines
15-5241-1

15-5241-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 2248846 [Map]; Strand: c
- AT1G07310.1 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
  Distance: 0; Region: exon1 (5UTR)
- AT1G07320.1 - [+] show detail - ribosomal protein L4
  Distance: -287; Region: promoter
- AT1G07320.2 - [+] show detail - ribosomal protein L4
  Distance: -287; Region: promoter
- AT1G07320.3 - [+] show detail - ribosomal protein L4
  Distance: -288; Region: promoter
- AT1G07320.4 - [+] show detail - ribosomal protein L4
  Distance: -288; Region: promoter

TTGATACAGA TGNTTGAGAT ACGAGCGCAC GTTAGCTAAG ACCACCGCGT 
AAGCCACCGT CTCGTCTTGA AACGCACCGT ATTCATGACT TCGTCGGAGC 
CACTCGACCT GGTTGTCACC GTCGTCTCTG CCAAGCACCT GAAGAATGTC 
AACTGGCGTA ACGGTGACCN GAAACCCTAC GTTGTTCTGT ATCTTGACCA 
AGACCACCCT CTCTCCACCC GCTCCGATGA TTCCTCCTCC ATCAAACCGG 
TGTGGAACGA GCGGATTACT CTTCCTCTCA CCCGATCTGT CCACGAATCG 
GTCCTCAACA TCGAGGTTTT TCATTCCAAT TCTTCGGATC TGGCGAAAAC 
CCTCGTCGGA TCGGTTAGGT TTCCTCTAGC TCGTTTGATT GACTCGGACG 
GGTCAATGAT TCCGGAATTG ATCAACTCGC TCGAGCTGGT TCGTCCATCG 
GGTCGACCAC AGGGGAAGAT TCGTTTGAAG CTCGCGATCA AAGACAGACC 
AATCCCTCCA CCGNAGCATC CTCCGNCACG TCCTCAATCT CAACCACTAN 
ATTACTATTC TGCCCCTCAA GGAAACCATT ATTACTCCCC NTANCCNTNG 
TNNTNNTNTN NTNNNNANNN NNNATANGNG TNNATNTNNT NNNNNNGANN 
NNNGGNNAAN NNANGNNGNN GNNNNNNNAN NNNNGN

3 prime edge [+] show sequence

Chromosome: 1; Position: 2248962 [Map]; Strand: c
- AT1G07310.1 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
  Distance: -1; Region: promoter
- AT1G07320.1 - [+] show detail - ribosomal protein L4
  Distance: -171; Region: promoter
- AT1G07320.2 - [+] show detail - ribosomal protein L4
  Distance: -171; Region: promoter
- AT1G07320.3 - [+] show detail - ribosomal protein L4
  Distance: -172; Region: promoter
- AT1G07320.4 - [+] show detail - ribosomal protein L4
  Distance: -172; Region: promoter

TGTATCAAAG TCTCAGCTAT CATCAACTAT CATCGTTTTA TCACAGAGTT 
TTATGTCTCA AAAAACCTGC TGGCTATATA AGAGGCTTTT GACTTTTGGA 
GTTTGACTCT TTCTTACTAG CGACAGCNTG GAGTTATTCA TGAACAGGAT 
AGTTATATCC TTATGTCCAA ACAGATGCAT AAATTCTCAC CAAGCACAAG 
ATAGGCATTT GAAGAGTGGA TAACACTTTC TCAGTCTTTC TTCTTCTTCT 
TCGTTGTGAT AGGTCAGGTC AGGGAACAAC AATGGCTTCT TCTGCAACAG 
CACCAAATTC GCTATCTTTC TTCTCATCTT CTNTCTTTTT ATCCTCCTCT 
CACCAAATCC CTAAAACCTA CATTTCCGTT TCAAAACTCG GCTCCGGCAG 
AGTCTCGAAG CCGCTTTCTG TCTCTTCCCA GCTAGCGACT CTACCGATTC 
TATCATTCGA AGGANAGAAG GTCGGAGAGA CGTATCTAGA CCTCAAAGCG 
GCGCCGGAGG ATACCGCGCG TGCCGTTGTG CACCGAGCCA TCGTGACGGA 
CCTGAATAAC AAGCGGCGAG GTACTGCTTC CACACTGACT CGCGGTGAAG 
TTCGTGGTGG NGGAATTAAA CCTTACTCAC AGAANAAAAC TGGCCACGCG 
AGGCGTGGAT CTCANAGAAC ACCGNTNCGT CCCGGNGGAG GTGTGGTGTT 
TGGGCCAANA CCTAAGGATN GGNCANTTA

AT1G07310.1

Model type: Protein coding
Short Description: Calcium-dependent lipid-binding (CaLB domain) family protein
Computational Description: Calcium-dependent lipid-binding (CaLB domain) family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT5G23950.1); Has 16203 Blast hits to 11144 proteins in 837 species: Archae - 8; Bacteria - 1073; Metazoa - 6146; Fungi - 3149; Plants - 3752; Viruses - 463; Other Eukaryotes - 1612 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G07320.1

Model type: Protein coding
Short Description: ribosomal protein L4
Curator Summary: encodes a plastid ribosomal protein L4
Computational Description: ribosomal protein L4 (RPL4); FUNCTIONS IN: structural constituent of ribosome, poly(U) RNA binding; INVOLVED IN: translation; LOCATED IN: in 10 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L4/L1e, bacterial-type (InterPro:IPR013005), Ribosomal protein L4 (InterPro:IPR015498), Ribosomal protein L4/L1e (InterPro:IPR002136); BEST Arabidopsis thaliana protein match is: Ribosomal protein L4/L1 family (TAIR:AT2G20060.1); Has 8127 Blast hits to 8127 proteins in 2686 species: Archae - 3; Bacteria - 5615; Metazoa - 117; Fungi - 103; Plants - 95; Viruses - 0; Other Eukaryotes - 2194 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G07320.2

Model type: Protein coding
Short Description: ribosomal protein L4
Curator Summary: encodes a plastid ribosomal protein L4
Computational Description: ribosomal protein L4 (RPL4); FUNCTIONS IN: structural constituent of ribosome, poly(U) RNA binding; INVOLVED IN: translation; LOCATED IN: in 9 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L4 (InterPro:IPR015498), Ribosomal protein L4/L1e, bacterial-type (InterPro:IPR013005), Ribosomal protein L4/L1e (InterPro:IPR002136); BEST Arabidopsis thaliana protein match is: Ribosomal protein L4/L1 family (TAIR:AT2G20060.1); Has 8071 Blast hits to 8071 proteins in 2657 species: Archae - 3; Bacteria - 5559; Metazoa - 117; Fungi - 103; Plants - 95; Viruses - 0; Other Eukaryotes - 2194 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G07320.3

Model type: Protein coding
Short Description: ribosomal protein L4
Curator Summary: encodes a plastid ribosomal protein L4
Computational Description: ribosomal protein L4 (RPL4); FUNCTIONS IN: structural constituent of ribosome, poly(U) RNA binding; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L4 (InterPro:IPR015498), Ribosomal protein L4/L1e, bacterial-type (InterPro:IPR013005), Ribosomal protein L4/L1e (InterPro:IPR002136); BEST Arabidopsis thaliana protein match is: Ribosomal protein L4/L1 family (TAIR:AT2G20060.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G07320.4

Model type: Protein coding
Short Description: ribosomal protein L4
Curator Summary: encodes a plastid ribosomal protein L4
Computational Description: ribosomal protein L4 (RPL4); FUNCTIONS IN: structural constituent of ribosome, poly(U) RNA binding; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L4 (InterPro:IPR015498), Ribosomal protein L4/L1e, bacterial-type (InterPro:IPR013005), Ribosomal protein L4/L1e (InterPro:IPR002136); BEST Arabidopsis thaliana protein match is: Ribosomal protein L4/L1 family (TAIR:AT2G20060.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR