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15-5244-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13144956 [Map]; Strand: c
      • AT4G25850.2 - [+] show detail - OSBP(oxysterol binding protein)-related protein 4B
        Distance: 0; Region: intron2 (CDS)
      • AT4G25850.1 - [+] show detail - OSBP(oxysterol binding protein)-related protein 4B
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 15-5244-1 - 5-prime edge 
    AATACCTCTC ATNGATTNCA AAAATATAAA TAAATGGGTG TTTGTATAAA 
    ATGAAAAAAG GTTTTTTCGA GTTATTTAAT ACTCTATCTA GAGAAGTAAT 
    AGTTGGAGGG TTCACAGTTC ACCTTTCATG CATAGTATAG TGTACCTACC 
    TACGGAGATA ACACTACTAA TTNNNACTAA GCTACTAACA AACACAAGAG 
    CCAAATATTT TTAGCATTAA TACAAAACAT CAATACTATA ATACATGTAA 
    CTGATATCTT ATGGGTAGTT AACATGAATT TTGAAACCTA TGCAACATGC 
    TAGCATAACT TTATAAACTG TTGGAATTTT TACTAATAAA TCATATATAG 
    TAAGATTCTT CTTAATTATA TGTATCGTAT CAGTTTCTAT TTCATGCAAA 
    ATATTCACAA TTCACTGATA ATTTTACATA CTAAAAAATA TTAAGAACAC 
    TTGATATCAT AAATCCTAAG ACGAACTTCA TCTTTTGTTC TTCACAAATA 
    AAATAAAATA ACAAAAGAAA TTAATGTTNG NTTTTTCTGN CTTTTAAAAA 
    AAAAAACNNN NNNNNANNTG NNNGGGGGGG GAGAAAANAA NNNNGNGNGN 
    GNGNGNNNNN NNNANNNC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13145072 [Map]; Strand: c
      • AT4G25850.2 - [+] show detail - OSBP(oxysterol binding protein)-related protein 4B
        Distance: 0; Region: intron2 (CDS)
      • AT4G25850.1 - [+] show detail - OSBP(oxysterol binding protein)-related protein 4B
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 15-5244-1 - 3-prime edge 
    GAGGTATTAA CTACGTACTG TTTAAGTAGT AAAATTAATC ATACCATGTG 
    CAACTAAGTT TTTTGGGTAA ATTATACACC ACTTGTAACT TATACAGATG 
    GTATCATCAA ACTCTATAAA ACAGTTGAAC ATTTATATTT CGTACAAATC 
    AAGTCATTTT CCAATTAATT TATTTAGATT ATGATGTTTA GCTTAATTAT 
    TTTTCTTCGA TCGTAAAGCT GCCACCTCAG CTGAACCTAC CAAGATCACA 
    ACTCCAATGT TACGGCGAGA TGGTCTACAG CTTCGTCGGT CAGGATCTGC 
    TTGGGGAATG CAGCCGCCGT GATCTTCCCA TTGAACGGCT CAAATCAGTG 
    GTGACGTGGA ACATCTCCAC ACTCCGTCCG GTGGTCTTTG GCATGTCTCC 
    GTACAACTCC GTTCTCGGCG AGACTCACCA CGTATCGAAC GGTCACATCA 
    ACGTCATCGC CGAACAAGTA TAATCATTTG TAATATAATC ATTATTTAGT 
    CATTACAACT ATAAACGAAA CATAGACTGA TATATATACA TCGTTAACTC 
    TTAGGTAGTG CATCATCCTC CGGTTTCCGC TCTTCATGCG ACTCACGAAC 
    AAGAAAATAT CGACGTGACA TGGGGTCAAT ATTTCACTCC TAAATTTCGN 
    GGGTATGTTT TTTTTTATCA TTTNAGTTTT GGAAGTNAAA TNGNTCTGCT 
    NCANCCCAAA TTATNT

AT4G25850.1

Model type
Protein coding
Short Description
OSBP(oxysterol binding protein)-related protein 4B
Computational Description
OSBP(oxysterol binding protein)-related protein 4B (ORP4B); FUNCTIONS IN: oxysterol binding; INVOLVED IN: steroid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Oxysterol-binding protein (InterPro:IPR000648); BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 4A (TAIR:AT4G25860.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G25850.2

Model type
Protein coding
Short Description
OSBP(oxysterol binding protein)-related protein 4B
Computational Description
OSBP(oxysterol binding protein)-related protein 4B (ORP4B); FUNCTIONS IN: oxysterol binding; INVOLVED IN: steroid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Oxysterol-binding protein (InterPro:IPR000648); BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 4A (TAIR:AT4G25860.1).
Link
InterPro Scan - TAIR