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15-5280-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3032884 [Map]; Strand: c
      • AT5G09760.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-5280-1 - 5-prime edge 
    NACAAATCGG TTATACGATA ACGGTCGGTA CGGGATTTTC CCATCCTACT 
    ACTGGTATAC TAGAGCAGCG CTCATCCAAG CTCGAGCGTC TTTGATTTTG 
    CCACGTGTTA AAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3032905 [Map]; Strand: c
      • AT5G09760.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-5280-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    AGTACGATTC ATGGTCAGCG CTCAAGTACG TCAACGACAC GAGCCAAGTA 
    GGTGAAACGA TGTCGTTTCT CGACGGACTT ATCCACGTCA CCAGCAACGC 
    GCTTAGCATG ATGGTATCGT ACGATAACTT CGGAGACAAC NGTCGCGTCG 
    TGGACTTACC CAGCAACGGA ACGTGACGGG TTTTGGGAAA AGACTGGGCC 
    TGGTTTGGGC TTAGATCCGA GTACAGGGCT TAATTTGGGT TTTCCTTCCG 
    GTTTAAAAGA AGACGTGACG GTGTGTAAAG ACGGAAAATG CGGTTACAAG 
    ACGGTGCAAG ACGCCGTTAA CGCTGCGCCG GAGGATAACG GAATGCGTAA 
    GTTCGTTATA AAGATTAGCG AAGGAGTCTA CGAGGAGAAC GTTATTGTTC 
    CGTTTGAGAA GAAGAACGTT GTGTTTATCG GTGACGGTAT GGGCAAAACG 
    GTCATTACAG GTTCGTTAAA CGCCGGTATG CCTGGGATCA CTACGTACAA 
    TACTGCAACT GTCGGTGAGT GTCTCTCGTA ACTTTTTAAT GTTAAAGCAA 
    CATAGTTTTT TTGTATAAAT TAAGAGTTGA AAGTTCATAA TTTTAATATT 
    GTTATTAGAG TTTANATGTA NATAAATATT ATGTGGTTTA AGTCTGGTCA 
    CGTGAAANAA TACTTTTTTG ATGANCTNTT CCAAAATGAT AANCNTATTA 
    ATCATTTTTT TTNGNNAANG GAAAN

AT5G09760.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily
Computational Description
Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, chloroplast, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT5G64640.1); Has 2807 Blast hits to 2761 proteins in 473 species: Archae - 6; Bacteria - 874; Metazoa - 1; Fungi - 174; Plants - 1725; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Link
InterPro Scan - TAIR