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15-5286-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7652924 [Map]; Strand: c
      • AT1G21770.1 - [+] show detail - Acyl-CoA N-acyltransferases (NAT) superfamily protein
        Distance: -636; Region: promoter
      • AT1G21780.2 - [+] show detail - BTB/POZ domain-containing protein
        Distance: 0; Region: intron2 (CDS)
      • AT1G21780.1 - [+] show detail - BTB/POZ domain-containing protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 15-5286-1 - 5-prime edge 
    CCATAAGGTA CNNCTAATCA TCAGCCAATC ATTAACATCT AAATTAATAT 
    CTTTCAGATT CCACATAATT GAATATAGTT CCCACATAAA AGGTAATTCA 
    CTTTCCTGAA ATACCTAATT CGAGCTCGAC AATAGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7653040 [Map]; Strand: c
      • AT1G21770.1 - [+] show detail - Acyl-CoA N-acyltransferases (NAT) superfamily protein
        Distance: -752; Region: promoter
      • AT1G21780.2 - [+] show detail - BTB/POZ domain-containing protein
        Distance: 0; Region: intron2 (CDS)
      • AT1G21780.1 - [+] show detail - BTB/POZ domain-containing protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 15-5286-1 - 3-prime edge 
    CCTTATGGGA TGGTTACAAC TGAATTAGGT TTGTTTAAGC TGAGATACTC 
    TGTTTATTTG GTGCAGTTTA TGAGAAGCTG CTGCGTACAA CTGATGATTG 
    TGTGTGGCAT GTTGACTCCA GTTTCCACGG TCGATTCACC ATTGATGTTG 
    AGTTTCTTGA TCTCAAAATC TGCCCTGTGA ATGTAAGCT

AT1G21770.1

Model type
Protein coding
Short Description
Acyl-CoA N-acyltransferases (NAT) superfamily protein
Computational Description
Acyl-CoA N-acyltransferases (NAT) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: Acyl-CoA N-acyltransferases (NAT) superfamily protein (TAIR:AT1G77540.1); Has 425 Blast hits to 425 proteins in 193 species: Archae - 10; Bacteria - 360; Metazoa - 6; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G21780.1

Model type
Protein coding
Short Description
BTB/POZ domain-containing protein
Curator Summary
BTB/POZ domain-containing protein. Contains similarity to gb:AJ000644 SPOP (speckle-type POZ protein) from Homo sapiens and contains a PF:00651 BTB/POZ domain. ESTs gb:T75841, gb:R89974, gb:R30221, gb:N96386, gb:T76457, gb:AI100013 and gb:T76456 come from this gene;supported by full-length. Interacts with CUL3A and CUL3B.
Computational Description
BTB/POZ domain-containing protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT1G55760.1); Has 5195 Blast hits to 5164 proteins in 157 species: Archae - 0; Bacteria - 0; Metazoa - 3886; Fungi - 25; Plants - 983; Viruses - 68; Other Eukaryotes - 233 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G21780.2

Model type
Protein coding
Short Description
BTB/POZ domain-containing protein
Curator Summary
BTB/POZ domain-containing protein. Contains similarity to gb:AJ000644 SPOP (speckle-type POZ protein) from Homo sapiens and contains a PF:00651 BTB/POZ domain. ESTs gb:T75841, gb:R89974, gb:R30221, gb:N96386, gb:T76457, gb:AI100013 and gb:T76456 come from this gene;supported by full-length. Interacts with CUL3A and CUL3B.
Computational Description
BTB/POZ domain-containing protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT1G55760.1); Has 5195 Blast hits to 5164 proteins in 157 species: Archae - 0; Bacteria - 0; Metazoa - 3886; Fungi - 25; Plants - 983; Viruses - 68; Other Eukaryotes - 233 (source: NCBI BLink).
Link
InterPro Scan - TAIR