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15-5372-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9558612 [Map]; Strand: w
      • AT1G27510.1 - [+] show detail - Protein of unknown function (DUF3506)
        Distance: -245; Region: promoter
      • AT1G27520.1 - [+] show detail - Glycosyl hydrolase family 47 protein
        Distance: -23; Region: promoter
    Flanking Genome Sequence: 15-5372-1 - 3-prime edge 
    CCGCCGCGTC TGATCTCTCG ATTAGAACAA CGTCAGTTCT TCTCTAACTG 
    GGGATTTGTT CCCTTCTTTC CAATTACCAT TTTGCCCTTT TGGTAAAAAA 
    CGAAAGTCAA AGAGCAGAAA ATATTATAAA ATTTTAAAAG ATATTGATTG 
    GTTGGTTCCC AAAAAGTGAA AATACCAGAA CCAAAAAAAA CCCAAAAATC 
    ATAGGAAAAT AAGAAAAACT CAGCCTTTGC ATTGGTAGTT TACCAAATTG 
    CCCTTGAACC ATCTCTAACT AAAGTTAAAA GTTAAAACCT TCGTCCCCTA 
    TCCATCCATA CATGTCCTGA GGTGTCAAAA ACTAAAGCAA AGCCTCTCAG 
    CACGGTGAGA GATTCCGGTG ATAACGTCCT CCGATGGCGA CAACTCAACC 
    ATGTCTTATC GGCCAAATAA TCGCTGTTCC TCAATTTCAC ATCCTCTTCA 
    GCCCCANAAA TTCTCTAAAG CCGGAGCTCT CGACCAACAA ACGCACAAAT 
    TTCTCCGTAT CTATCGGTCT ACGACATTCC TTCGCTTCTT CTATATCAAC 
    CTGGAACCCT AAAGCCCCAT CTTTAAGCTG TCTGCGAAAT TGCGCCGCTG 
    TTGATGGAGC TGATACCAGT TCGTGTGAGG GTAAGTGGGA TTGGGGATTG 
    GGATCGTTGG AACCGTCACT TCTCCGANAT TGAAGAAGTC GAGAGCGTTG 
    TTTNTCTTCT A

AT1G27510.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF3506)
Computational Description
FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: response to singlet oxygen; LOCATED IN: thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3506 (InterPro:IPR021894), UvrB/UvrC protein (InterPro:IPR001943); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3506) (TAIR:AT4G33630.2); Has 287 Blast hits to 280 proteins in 95 species: Archae - 0; Bacteria - 15; Metazoa - 66; Fungi - 43; Plants - 121; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G27520.1

Model type
Protein coding
Short Description
Glycosyl hydrolase family 47 protein
Computational Description
Glycosyl hydrolase family 47 protein; FUNCTIONS IN: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, alpha-mannosidase activity, calcium ion binding; INVOLVED IN: protein amino acid N-linked glycosylation; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 47 (InterPro:IPR001382); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 47 protein (TAIR:AT5G43710.1); Has 2179 Blast hits to 1853 proteins in 199 species: Archae - 0; Bacteria - 11; Metazoa - 788; Fungi - 990; Plants - 198; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink).
Link
InterPro Scan - TAIR