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15-5388-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23107804 [Map]; Strand: w
      • AT3G62470.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-5388-1 - 5-prime edge 
    CNCATNTNTT NGGGTGAGGA NACCATCNTN ACTGAACTAT TNNNTNNACT 
    GATAAAATAC TCATCATGGA GNCATATGTN CTTGAGTCAT GAGCAAATCC 
    TTGTCTCTCT GCAGCCCAAC AGAAGAACCT AAATGCAGGC TTCCTANCAT 
    GTCGAAAACG TTCTAAAACC TNNNGGANGA GATCATGTGA TAAATCTAGT 
    TTCATTTCAT CAAGAACAGC TTCCATATTT CTATCTAACG CAAACAATTC 
    ATCAATCACT TTGCAGACTC TCTCTACTTC TTCCGGATTA GTACTTGATT 
    CAACACAACT GACCCCAGTT TCTTCATCAT TATCGCATTC AGATTCAACT 
    TCTTCATCAC ATCCATCACT AACATTAGAA CTACCACTAG AGAAACCTCT 
    ACACCCAAGA CTCGCATCAA GCAGTTGTAC AGAGGAGTGT GGCAATGGAA 
    TTTGACNGTA AGGATGATAN GTNAANAATG AATCNTACNA GANAAGANAG 
    CNCCGGAAAA NNNNANNNNN NNTNNTNNNN NNNNNCNNNN NA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4793162 [Map]; Strand: w
      • AT5G14820.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    2. Chromosome: 3; Position: 23107690 [Map]; Strand: w
      • AT3G62470.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    3. Chromosome: 3; Position: 23134604 [Map]; Strand: w
      • AT3G62540.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-5388-1 - 3-prime edge 
    GAGATGGGTA CGAAAGGTCT ATTGACGATG GAGACATTCA CTATCGCGAT 
    GAAAGCT

AT3G62470.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G62540.1); Has 39079 Blast hits to 12185 proteins in 290 species: Archae - 4; Bacteria - 32; Metazoa - 449; Fungi - 607; Plants - 36694; Viruses - 0; Other Eukaryotes - 1293 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62540.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G14820.1); Has 36772 Blast hits to 11783 proteins in 282 species: Archae - 3; Bacteria - 24; Metazoa - 449; Fungi - 549; Plants - 34543; Viruses - 0; Other Eukaryotes - 1204 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G14820.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G62540.1); Has 37965 Blast hits to 11999 proteins in 283 species: Archae - 3; Bacteria - 24; Metazoa - 443; Fungi - 549; Plants - 35727; Viruses - 0; Other Eukaryotes - 1219 (source: NCBI BLink).
Link
InterPro Scan - TAIR