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15-5467-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Flowering & Growth::dwarf/small)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed yield::low yield)
vascular leaf (PO:0009025)
  • desaturated green (PATO:0001272)
    (Leaves::pale green)

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7589215 [Map]; Strand: c
      • AT1G21640.2 - [+] show detail - NAD kinase 2
        Distance: 0; Region: exon2 (CDS)
      • AT1G21640.1 - [+] show detail - NAD kinase 2
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 15-5467-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
    TGGTTCCAGG GGACATTGCT GAGGTTGAGG CGTATTGTAG AATTTTTAGA 
    TCAGCTGAGC GACTACATGG AGCGTTGATG GAGACACTAT GCAACCCTGT 
    GACTGGTGAA TGTCGAGTAC CGTATGATTT CTCACCGGAG GAAAAACCAT 
    TGTTGGAGGA CAAAATAGTA TCAGTGCTTG GTTGTATATT ATCTCTTTTA 
    AACAAAGGAA GGAAAGAAAT TCTCTCTGGG AGGTCATCTT CTATGAATT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7589151 [Map]; Strand: c
      • AT1G21640.2 - [+] show detail - NAD kinase 2
        Distance: 0; Region: intron1 (CDS)
      • AT1G21640.1 - [+] show detail - NAD kinase 2
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 15-5467-1 - 5-prime edge 
    CCTGGAACTG GACCAATCCA AGGCAAGTTT GATGTATCGC GGGATTTCAC 
    AGCCTTCAAT ATCAAAGTGT ATGAAGTCAG TCGAAATACT AAATAAGCAA 
    CTCTGATCAG CAAAAGTTTC GCTTAAAAAT CATGAAACGA TTCGATAATC 
    TAAAGATCCT AAGAACAATT AAATTCAGCT TCGCAAACTC TGTCTCTCTA 
    AGTTTAGATT GATCGAACAA AGTGAATGAA AACAAGCAAG GAAGTCGAGA 
    GAAGTAAGTA AGTAACCTGA GAATCCAAAC CTAAATCGGG AGAAAAAGCT

AT1G21640.1

Model type
Protein coding
Short Description
NAD kinase 2
Curator Summary
Encodes a protein with NAD kinase activity. The protein was also shown to bind calmodulin.
Computational Description
NAD kinase 2 (NADK2); FUNCTIONS IN: NAD+ kinase activity, calmodulin binding; INVOLVED IN: pyridine nucleotide biosynthetic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATP-NAD kinase, PpnK-type, alpha/beta (InterPro:IPR017438), ATP-NAD kinase, PpnK-type (InterPro:IPR016064), ATP-NAD/AcoX kinase (InterPro:IPR002504), ATP-NAD kinase, PpnK-type, all-beta (InterPro:IPR017437); BEST Arabidopsis thaliana protein match is: NAD kinase 1 (TAIR:AT3G21070.2); Has 8697 Blast hits to 8591 proteins in 2758 species: Archae - 277; Bacteria - 5531; Metazoa - 247; Fungi - 416; Plants - 137; Viruses - 0; Other Eukaryotes - 2089 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G21640.2

Model type
Protein coding
Short Description
NAD kinase 2
Curator Summary
Encodes a protein with NAD kinase activity. The protein was also shown to bind calmodulin.
Computational Description
NAD kinase 2 (NADK2); FUNCTIONS IN: NAD+ kinase activity, calmodulin binding; INVOLVED IN: pyridine nucleotide biosynthetic process, metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATP-NAD kinase, PpnK-type, alpha/beta (InterPro:IPR017438), ATP-NAD kinase, PpnK-type (InterPro:IPR016064), ATP-NAD/AcoX kinase (InterPro:IPR002504), ATP-NAD kinase, PpnK-type, all-beta (InterPro:IPR017437); BEST Arabidopsis thaliana protein match is: NAD kinase 1 (TAIR:AT3G21070.2).
Link
InterPro Scan - TAIR