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15-5522-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8050629 [Map]; Strand: w
      • AT1G22740.1 - [+] show detail - RAB GTPase homolog G3B
        Distance: 0; Region: exon7 (3UTR)
      • AT1G22750.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -231; Region: promoter
      • AT1G22750.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -231; Region: promoter
      • AT1G22750.3 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -231; Region: promoter
      • AT1G22750.4 - [+] show detail - unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1...
        Distance: -231; Region: promoter
    Flanking Genome Sequence: 15-5522-1 - 5-prime edge 
    TNATGCAAAC NNNNTTTGTN AACGGGCAAA ACTAACAAAN NCGGTTATAC 
    GATAACGGTC GGTACGGGAA TTTTCCCATC CTACTTTCAT CCCCGNTTTG 
    TATGTAACAA CAGCTCAAGT GTACATGTAA TGGGTTGGTT CTGTCTTCTT 
    TATGTAATGG GAAACTAATG ATGAGTCCGG TTCAGCCGCG CTAAACCGAA 
    TCCGGTTCGG TTTGAAATAT CAGTTAGCAA TTTGGCGGNG ACGTGGCGCT 
    TCCTTCCCCA CTTGTGGGGN TCCTTAAAAT NACNAGCCNG GGNNGTNTTT 
    NNTTNNTGCN NTATAGGGAG NNNNNNNNNA NNNNGNNNNN NGGGGGGCCC 
    CCCC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8050343 [Map]; Strand: w
      • AT1G22740.1 - [+] show detail - RAB GTPase homolog G3B
        Distance: 0; Region: intron6 (CDS)
      • AT1G22750.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -517; Region: promoter
      • AT1G22750.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -517; Region: promoter
      • AT1G22750.3 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -517; Region: promoter
      • AT1G22750.4 - [+] show detail - unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1...
        Distance: -517; Region: promoter
    Flanking Genome Sequence: 15-5522-1 - 3-prime edge 
    ATTGAAAACA GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC 
    AGGAGGAGAT TCACAAAGTG AGAGGATCAC ATAAAGAAAG ACTAATAACA 
    CTTACATATC TTGGTCGCGT TCATTTGCAA GGGCAAGTTT TGTGATGCAC 
    AAGAAGGAGT CATCGACATT GTAATCTTCT TTAGCCGATG TCTCGAAATA 
    GACTATGTTT CCCTTTTCAG CACACCATTC TCTAGCCTTC TTCTCAGATA 
    CCTGAACACA AAGAAAGGAA ATATATAGCA AACAAAGGAA ATGGACTATT 
    CAGATTTAAA AGCT

AT1G22740.1

Model type
Protein coding
Short Description
RAB GTPase homolog G3B
Curator Summary
GTP-binding protein Rab7
Computational Description
RAB GTPase homolog G3B (RABG3B); FUNCTIONS IN: GTP binding; INVOLVED IN: intracellular protein transport, signal transduction, nucleocytoplasmic transport, protein transport, small GTPase mediated signal transduction; LOCATED IN: vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), Ras (InterPro:IPR013753), Ras small GTPase, Ras type (InterPro:IPR003577), Small GTPase, Rho type (InterPro:IPR003578), Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Small GTPase (InterPro:IPR020851), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog G3A (TAIR:AT4G09720.1); Has 25691 Blast hits to 25666 proteins in 724 species: Archae - 21; Bacteria - 135; Metazoa - 13533; Fungi - 3489; Plants - 2837; Viruses - 20; Other Eukaryotes - 5656 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G22750.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1475 (InterPro:IPR009943); Has 185 Blast hits to 155 proteins in 21 species: Archae - 0; Bacteria - 8; Metazoa - 3; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G22750.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1475 (InterPro:IPR009943); Has 185 Blast hits to 155 proteins in 21 species: Archae - 0; Bacteria - 8; Metazoa - 3; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G22750.3

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1475 (InterPro:IPR009943); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G22750.4

Model type
Protein coding
Computational Description
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1475 (InterPro:IPR009943); Has 186 Blast hits to 155 proteins in 21 species: Archae - 0; Bacteria - 8; Metazoa - 3; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).
Link
InterPro Scan - TAIR