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16-0004-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26508317 [Map]; Strand: w
      • AT5G66350.1 - [+] show detail - Lateral root primordium (LRP) protein-related
        Distance: -1748; Region: intergenic
      • AT5G66360.1 - [+] show detail - Ribosomal RNA adenine dimethylase family protein
        Distance: -1912; Region: intergenic
    Flanking Genome Sequence: 16-0004-1 - 5-prime edge 
    CTGCCAAATA TCTGCACTTC AAACGCATCT AGTCATCTAC CATTCTACTT 
    GACCCCGGTA CCATCTTTTG GAGATTTAGA ATGTATGTTA TGCCCATTAT 
    CAATAAGAAA ACATGGAAAT GTGGAAAGAA CTTTATAAAC TAGAGAATAA 
    AGAAAAGTAA GTTTGGAGCA TAGTGTTTGT TGGCTTCTAA ATATCACTTG 
    TACACAATTA CACATTATTA CCAATAAAGA GAAAATCACT TCTTAATATA 
    TATTTTTCTT ACATAGGCAG AAAGAGAAGA GTGTTTACTA CAAAAGAAGC 
    ACGCACTGAT TTGGTTTTTT CACTTTCACC CATTCATTGC TCTTCTACAC 
    TCTTTTAAAT CTCTCCTTTT CTCTTCAACT TTGAAACTGA AAAAGGACAT 
    AAAAGATTTG GTGGGTTATG TTTCTTTTCT TTGGAGCCAA TAACGGAGCT 
    TAGAGATTCT TGCAACTTTT TTCCCCCTTG CATCCTCCTT TACTCAATAG 
    TAATTTATGT GTATTCTGTA TCTCTTCACA AAATAATAAA CAAAGACTGT 
    CTTTCACCAC GAAATCTCTT GAGAAGCTGC AAAGTTGGGT AAAACTTAAA 
    TGAAATGTAC ACTTTTTTAT ATATTACATA TNCCGTTTTC AGAAATAGAT 
    TTCATAAACT ATGTGTTCCA TATGGATC

AT5G66350.1

Model type
Protein coding
Short Description
Lateral root primordium (LRP) protein-related
Curator Summary
A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Shi mutant is dominant, has dwarf phenotype. Loss of function mutations have no observable phenotype. Putative zinc finger protein. Involved in the response to gibberellic acid.
Computational Description
SHORT INTERNODES (SHI); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: Lateral root primordium (LRP) protein-related (TAIR:AT3G51060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66360.1

Model type
Protein coding
Short Description
Ribosomal RNA adenine dimethylase family protein
Computational Description
Ribosomal RNA adenine dimethylase family protein; FUNCTIONS IN: rRNA methyltransferase activity, rRNA (adenine-N6,N6-)-dimethyltransferase activity; INVOLVED IN: rRNA modification; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal RNA adenine methylase transferase, N-terminal (InterPro:IPR020598), Ribosomal RNA adenine methylase transferase, conserved site (InterPro:IPR020596), Ribosomal RNA adenine methylase transferase (InterPro:IPR001737); BEST Arabidopsis thaliana protein match is: Ribosomal RNA adenine dimethylase family protein (TAIR:AT2G47420.1); Has 10133 Blast hits to 10130 proteins in 3048 species: Archae - 291; Bacteria - 6778; Metazoa - 278; Fungi - 201; Plants - 119; Viruses - 0; Other Eukaryotes - 2466 (source: NCBI BLink).
Link
InterPro Scan - TAIR