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16-0007-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8268814 [Map]; Strand: c
      • AT1G23310.2 - [+] show detail - glutamate:glyoxylate aminotransferase
        Distance: 0; Region: exon14 (CDS)
      • AT1G23310.1 - [+] show detail - glutamate:glyoxylate aminotransferase
        Distance: 0; Region: exon14 (CDS)
    Flanking Genome Sequence: 16-0007-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCTTG ATGCCAGAGA TGCCGGAGAT CATGGATAGC 
    TTCAAGAAGT TCAACGACGA GTTCATGACT CAGTATGATA ATAACTTTGG 
    TTATTCGAAA ATGTGATTAC TTCTTCTTCT GAACGACTAT TGTGTTCTGC 
    TACACTCTTT AAAGCTAAAT CTCTGTAGTA CACTCTTTCT CTTTGCCCTA 
    TTCTATAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8268823 [Map]; Strand: c
      • AT1G23310.2 - [+] show detail - glutamate:glyoxylate aminotransferase
        Distance: 0; Region: intron13 (CDS)
      • AT1G23310.1 - [+] show detail - glutamate:glyoxylate aminotransferase
        Distance: 0; Region: exon14 (CDS)
    Flanking Genome Sequence: 16-0007-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    ACAGGATTGT TGTCCTCAGA TGGAACACAC TGTCAAAATC CACAAGTGGA 
    ATGAGTTCAT AAGAAGAGAT CAGATGAGCA AGAAAGAAAC AGTAGTAGCA 
    GATTCTTTAC CCTTCTTTCT GTCCAAATCC AGAGCCAGGT ACTTGTGGAG 
    ATTCCTGTGG CTTCTAAGAG CTTGAGACAG TAGAAAACGT CTGGCACTTT 
    TCCAGCTTGT TTTGCAGCTT GGAGAGCTCC CGTTGGTAAC CGTATTTGAG 
    GAAACGAATA CATTGCACCT AACATTTACA CCAAGAATTA AAGGATCAAC 
    TTCAACAACA TATACTCCCA AATTTTCTAC ACTGCACAGG TGCTAATTGC 
    TTCATTATTG TTTTACCTTC TGTGAAATTG CACACGACGT TTTTGCAGCT 
    GTTGAATCCA TCTGTCATGA GCCTTGCTCT TCTTCTCAAA GATTCAAGAA 
    TCCCCTTGCT AAAGAAATGT GCAAAAGGGC GATTTGTTAT TCAATCCAGG 
    GATGCTGATC ACGAGCATGT AAGCT

AT1G23310.1

Model type
Protein coding
Short Description
glutamate:glyoxylate aminotransferase
Curator Summary
Identified by cloning the gene that corresponded to a purified protein having glyoxylate aminotransferase activity. Localized to the peroxisome and thought to be involved in photorespiration/ metabolic salvage pathway.
Computational Description
glutamate:glyoxylate aminotransferase (GGT1); FUNCTIONS IN: glycine:2-oxoglutarate aminotransferase activity, L-alanine:2-oxoglutarate aminotransferase activity, alanine-glyoxylate transaminase activity; INVOLVED IN: photorespiration; LOCATED IN: apoplast, peroxisome, chloroplast, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: alanine-2-oxoglutarate aminotransferase 2 (TAIR:AT1G70580.4); Has 27976 Blast hits to 27968 proteins in 2949 species: Archae - 777; Bacteria - 19095; Metazoa - 617; Fungi - 736; Plants - 1276; Viruses - 0; Other Eukaryotes - 5475 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G23310.2

Model type
Protein coding
Short Description
glutamate:glyoxylate aminotransferase
Curator Summary
Identified by cloning the gene that corresponded to a purified protein having glyoxylate aminotransferase activity. Localized to the peroxisome and thought to be involved in photorespiration/ metabolic salvage pathway.
Computational Description
glutamate:glyoxylate aminotransferase (GGT1); FUNCTIONS IN: glycine:2-oxoglutarate aminotransferase activity, L-alanine:2-oxoglutarate aminotransferase activity, alanine-glyoxylate transaminase activity; INVOLVED IN: photorespiration; LOCATED IN: apoplast, chloroplast, peroxisome, vacuole, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: alanine-2-oxoglutarate aminotransferase 2 (TAIR:AT1G70580.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR