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16-0019-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23423581 [Map]; Strand: c
      • AT3G63445.2 - [+] show detail - other RNA
        Distance: 0; Region: intron2 (NonCoding)
      • AT3G63445.3 - [+] show detail - other RNA
        Distance: 0; Region: exon2 (NonCoding)
      • AT3G63445.1 - [+] show detail - other RNA
        Distance: 0; Region: intron3 (NonCoding)
      • AT3G63440.1 - [+] show detail - cytokinin oxidase/dehydrogenase 6
        Distance: -576; Region: promoter
    Flanking Genome Sequence: 16-0019-1 - 5-prime edge 
    GTTGTGGCAG CTCAAAAAAA AGCAACCAAT GAGTAAGTCT TCCTGTTACC 
    TGACTGATTT AAGGCCTCCC ATTGCAGCTA GCGTGACAAA ACTAAATGAA 
    TCATCTCTTC TTTTCTTAAA TTCTTTTGAT CAGACATTAT GATAAAAGAT 
    TAGCTTTATA TTATGCTTTA GTNAACTNTT GCTAAACATC GGGCAGGAGG 
    ATAANTTTTT TTTTTCTCAC TGCTTCTTCA GATAGAATCC TGTGGGAGNG 
    GGGGNGGGCC CCCTTNTTCC TNNTNACTAN GNGGTNTNNA AAAAAAAAAA 
    NCGGANGNGA GGGTNNGAAN GATNTNGCAT TTCGGTGTCC TTCGCNNGNN 
    NGGNNCNNCG GNAGGGGGGG CNNNTCNNNT NNGGGGNNAG NAGGGNGNAG 
    GAAAANNGNN CNNNGGCGGG CNNTGGTNNG NTNTNCGCCT CNCCNNCCNN 
    GCGAAAGAGA NGAGNGAGAN AAATNANNAA NNANCNNACC NAANTNGNCN 
    TNTNACAANT ANTATCNNGA GCANNNNCCG NNGGAGNGCN NGNNTGTNTN 
    CNNNCNTTTA GGAAANAAAA AAANAANAAA NGAAAANAAC ANNGCGNGNN 
    CNANAGAAAN CGTGNGNCAN ANNCCGNGTA NGNGCNGGNN GGNGNGNAAN 
    GNCAAGAGCN GNNCCGAANN GGANANNGNN AGATCANTCN NTCNGCCNAT 
    GAAAAGCGNN NGNGCGACNN AANANNATAA NNGAAAGNAA AACTTTANGN 
    NNTNNAGNAN ATAAATAAAA TAAAAAAAAA AAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23423697 [Map]; Strand: c
      • AT3G63445.2 - [+] show detail - other RNA
        Distance: 0; Region: exon2 (NonCoding)
      • AT3G63445.3 - [+] show detail - other RNA
        Distance: 0; Region: exon2 (NonCoding)
      • AT3G63445.1 - [+] show detail - other RNA
        Distance: 0; Region: exon3 (NonCoding)
      • AT3G63440.1 - [+] show detail - cytokinin oxidase/dehydrogenase 6
        Distance: -460; Region: promoter
    Flanking Genome Sequence: 16-0019-1 - 3-prime edge 
    GCCACAGCCT CTTTTAGTTT ACAAGGATTG TGTTGTTGGG TCCCAACACT 
    AGTGAAATTG CCTCCTATTT TCCCACAGAG AGCACAAGGA TTTTTTCCCT 
    TGCACGTTCC ACCATTCTTT TACTCTCACG GATGATACAG GAACCAATCC 
    TTTTTGCGCT TCATCTGAGT CAAAAGCCTG AAAAAGACCA CATATAATAC 
    ATCTCAGCCT AAAAAGCAAA TACCATACCT ACGACTGGAA ACATATGGGA 
    TAAGAGGATA AATAAATAAA GGGAATCCTT CAAATGGTAA GTTTCAAAGT 
    AAAAGTGTTA TGGTATGATC TTGTCTGCCT TTTCTTTGAA AAAGCCAAGA 
    TTGTGGGTGT AACTGTTATC AAAAGATAAA AAGATTCGTG AGATC

AT3G63440.1

Model type
Protein coding
Short Description
cytokinin oxidase/dehydrogenase 6
Curator Summary
This gene used to be called AtCKX7. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.
Computational Description
cytokinin oxidase/dehydrogenase 6 (CKX6); CONTAINS InterPro DOMAIN/s: Cytokinin dehydrogenase 1, FAD/cytokinin binding domain (InterPro:IPR015345), FAD-binding, type 2 (InterPro:IPR016166), FAD-linked oxidase-like, C-terminal (InterPro:IPR016164), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: cytokinin oxidase/dehydrogenase 1 (TAIR:AT2G41510.1); Has 6490 Blast hits to 6485 proteins in 1279 species: Archae - 163; Bacteria - 4080; Metazoa - 140; Fungi - 1069; Plants - 530; Viruses - 0; Other Eukaryotes - 508 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63445.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT3G63440
Link
InterPro Scan - TAIR

AT3G63445.2

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT3G63440
Link
InterPro Scan - TAIR

AT3G63445.3

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT3G63440
Link
InterPro Scan - TAIR