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16-0021-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
stem (PO:0009047)
  • dark green (PATO:0001249)
    (Stems::dark green)
vascular leaf (PO:0009025)
  • dark green (PATO:0001249)
    (Leaves::dark green)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16195330 [Map]; Strand: c
      • AT2G38740.1 - [+] show detail - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 16-0021-1 - 5-prime edge 
    TATGGAACCT TGTTATTACT CAGTTTCAAG CTCTTGTGTC AATCAATTTT 
    GTTTCTTTCT ATCATTCGCA GATTGGTTTT AACAATGGTG TCCCAATCGA 
    TGAGAAATTC TTTGTTGAGA ACATTGCTGG AAAACACAAT TCTGAAATTG 
    CTCTACTTCT GTTCCCTGAT GATGTTTCAA GAGGGTTAAA ATTCTGTGAT 
    GAAAAGGAAG CTCTTTACCG CAAGTAAGCT ATTTTTCTGT GTTTCCTCCA 
    TTCTTTTAAT GTCACAAACT CTTTTCAGGT CTGAGTTCAT TTGGAGTAAC 
    TTTGTTTTGT TCTTTTTTCT TGATGATTAG AATTGTTGCA GAGAANATAA 
    AGCCACTTGA TGGGCTTATA AAACTGACCA AATGGATCGA AGATCATGGA 
    TTGAAACGAG CTGCGGTAAC AAACGCTCCA AAAGAAAACG CAGAGCTCAT 
    GATATCGAAA CTTGGTCTGA CTGATTTCTT TCAAGCAGTG ATTCTTGGCT 
    CTGAATGTGA ATTTCCCAAA CCACACCCTG GACCTTACTT GAAGGCTCTT 
    GAAGTGCTTA ACGTGTCAAA GGAGCACACG CTAGTTTTCG AAGACTCGAT 
    CTCTGGGATA AAAGCTGGAG TTGCAGCTGG AATGCCAGTG ATTGGACTGA 
    CTACAGGGAA TCCAGCAAGC CTGCTTATGC AAGCNAAACC CGCTTTTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16195446 [Map]; Strand: c
      • AT2G38740.1 - [+] show detail - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 16-0021-1 - 3-prime edge 
    GTTCCATAGC ATATTATTCA CAGTTTTCTA AAGTCTTGTT GTAAATTTGA 
    AGTTATAATT ATGACATTAA AAAAAGCAAG GAACCTCTTG AAGCAGTTCT 
    TGGAAGGCAA TAAGGTGGAT GGGATCTGAG TCACAGAGTG TTCCATCAAC 
    ATCAAACAGA ATGGCTTCTA ATGGAGCTAG TTGTGACAGA GAAGGTTTGC 
    TTCACCACAA ATCAAAAGAG TTCAGTAATA TTAAAACCAT GAGAAACTGC 
    GATGAGATTG CATCAAAAGG ATCAAACTTT AGATACCATA ATCAAATGGG 
    TTTAAGATCA AAGACCAATT AGAAACATTT GATGTTTATC AACTAAAATC 
    AGGAAATTTT AGGCAACGAG TTCCATTGAT CTTGGAGAAA CAAACATTAG 
    CACAAAAATC GCAGTTTTCT AACAAAAGTA ACACAAAATC CTAGAAACAT 
    AATGGGAGAC GGAAATGGAA GCTGAGACCG AAGATTACTA AGATGAACAA 
    ATATATAGAG GCAAGATCAT GTATAAATGA GATTATTATA AGCATCATTG 
    ATGATCAGAC AAAGCGTACC TCTCAGAAGG ATTAAGATCA GAGAAGCCAT 
    TCATTGTGAT GACACCCGAA GAAAACGGAT CTGCGATTGC AAACAAATGG 
    TTTTGAGAGA TTTGTCACCA AACAAACACC ANANAGAGTT TGAAGAATAT 
    TTTGTTAAGA GGACA

AT2G38740.1

Model type
Protein coding
Short Description
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Computational Description
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Haloacid dehydrogenase/epoxide hydrolase (InterPro:IPR005833), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: haloacid dehalogenase-like hydrolase family protein (TAIR:AT1G56500.1); Has 17978 Blast hits to 17978 proteins in 2581 species: Archae - 265; Bacteria - 14433; Metazoa - 167; Fungi - 429; Plants - 387; Viruses - 3; Other Eukaryotes - 2294 (source: NCBI BLink).
Link
InterPro Scan - TAIR