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16-0048-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11385672 [Map]; Strand: w
      • AT1G31772.1 - [+] show detail - Defensin-like (DEFL) family protein
        Distance: 6258; Region: intergenic
      • AT1G31780.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Conserved oligomeric complex COG6 (InterPro:IPR01...
        Distance: -5555; Region: intergenic
    Flanking Genome Sequence: 16-0048-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    GTTTTGCAAC TGTGGTGACA AGTCTTGAGC CGTCTTCTTA CCTAAATTTT 
    GTAGTATTTT TTATTATATG ACTTGTTGCA GACTAATTGT TTGTCACATT 
    TATAGTATTC TAAATACTCT ATCTAGTAAA TCGATTTGTG ATTATTTGAA 
    AATTTAGATC AAACACCTTG GGAGCTAGTC GTATATGTGT TTGAAATTGT 
    TTGTGTAGAT CATATGATAT AGATGCCTGA AAATATGGAT GTTTAAGCT

AT1G31772.1

Model type
Protein coding
Short Description
Defensin-like (DEFL) family protein
Curator Summary
Encodes a defensin-like (DEFL) family protein.
Computational Description
Defensin-like (DEFL) family protein; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G31780.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: Conserved oligomeric complex COG6 (InterPro:IPR010490); Has 384 Blast hits to 379 proteins in 190 species: Archae - 0; Bacteria - 4; Metazoa - 151; Fungi - 156; Plants - 42; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Link
InterPro Scan - TAIR