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Mutant Lines
16-0057-1

16-0057-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity /structure development stage	Phenotype
seedling (PO:0008037)	desaturated green (PATO:0001272) (Seedling::pale green)

Anatomical entity
/structure development stage

Phenotype

seedling (PO:0008037)

desaturated green (PATO:0001272)
(Seedling::pale green)

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 1; Position: 8028456 [Map]; Strand: c
  - AT1G22700.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
    Distance: 0; Region: exon5 (CDS)
  - AT1G22700.2 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
    Distance: 0; Region: exon5 (CDS)
  - AT1G22700.3 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
    Distance: 0; Region: exon5 (CDS)
Flanking Genome Sequence: 16-0057-1 - 5-prime edge
```
GCTGCAACCC GGTTATGTAA CAGCTTGGAA CAACCTTGGG GATGCTTATG 
AGAAGAAGAA GGAGTTGCCT TTGGCATTGA ATGCAGTTTG AAGAAGTTTT 
GTTGTTTGAT CCAAACAATA AGGTGGCTCG GCCTCGGCGA GATGCGTTGA 
AGGATCGCGT GAAGCT
```

3 prime edge [+] show sequence

Chromosome: 1; Position: 8028572 [Map]; Strand: c
- AT1G22700.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
  Distance: 0; Region: exon5 (CDS)
- AT1G22700.2 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
  Distance: 0; Region: exon5 (CDS)
- AT1G22700.3 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
  Distance: 0; Region: exon5 (CDS)

GTTGCAGCTT CACCGCCATT TCAAACTGAG CAATTCCTTT GTCAAGTTTA 
TCCTCTCGTA CATAACTCAC TCCAAGAGCG TTATAGACCT GTCTCAGGAA 
TTGTATATTG CAGTGTCAAT TGATTTTTTA TTTACTTGGT AACGGTATTA 
GTGTAAAAGT CTATTACCTG AGCAAGATCT TGATCATCAC CGTCCCATTT 
CTGGATAGCT TGTTGCAAAA ACTTGTTGGC TGCAGGATAA AACTTCCTTC 
TCAACATCAC TGCACCAAGC TCAAAGAGCT CTGTTGCACT TGCATCTCCG 
CTCCTTACTT GCTCCTTCAG GTCATAAAGA CAACAATAGA ACCATAGCAT 
CCAGATTTGA TCAAATTAAC AAAAACGTTG AGCAAGCATA GCTACTTAAA 
TAAGTCTAAT GTTCATAATA TCTACAATTA TTATGTGAAT AGCATTAAAA 
GATAAGAGAC AGACAATGAT ACGAGAGACA TCAATATTAC ATCTCTACTC 
TAGACTCGTT CCATCTCAGT TACTTATCCT ACTGTTTTCT ACCACAAAGA 
GCACATTGTC TGGTACCTGC AATTCTTTAG CGGAGAGGTC TAGTTCTCTG 
CGTACAAGTA CTTGACGGAT CACATAGAAA GTACCAACTC CAAGCAACCC 
CAGTAGTAAC AGCAAGTAAG AAAGCTGAAT ACTAAGTTCA AATAACTCTC 
CAACTTCGTA A

AT1G22700.1

Model type: Protein coding
Short Description: Tetratricopeptide repeat (TPR)-like superfamily protein
Curator Summary: Encodes a TPR protein with homology to Ycf37 from Synechocystis that is localized to the thylakoid membrane and is involved in photosystem I biogenesis.
Computational Description: Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: photosystem I assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G11540.1); Has 4976 Blast hits to 3489 proteins in 588 species: Archae - 121; Bacteria - 1806; Metazoa - 382; Fungi - 139; Plants - 249; Viruses - 0; Other Eukaryotes - 2279 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G22700.2

Model type: Protein coding
Short Description: Tetratricopeptide repeat (TPR)-like superfamily protein
Curator Summary: Encodes a TPR protein with homology to Ycf37 from Synechocystis that is localized to the thylakoid membrane and is involved in photosystem I biogenesis.
Computational Description: Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: photosystem I assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G11540.1); Has 4973 Blast hits to 3484 proteins in 586 species: Archae - 121; Bacteria - 1802; Metazoa - 381; Fungi - 139; Plants - 249; Viruses - 0; Other Eukaryotes - 2281 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G22700.3

Model type: Protein coding
Short Description: Tetratricopeptide repeat (TPR)-like superfamily protein
Curator Summary: Encodes a TPR protein with homology to Ycf37 from Synechocystis that is localized to the thylakoid membrane and is involved in photosystem I biogenesis.
Computational Description: Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: photosystem I assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G11540.1); Has 4968 Blast hits to 3486 proteins in 584 species: Archae - 119; Bacteria - 1806; Metazoa - 382; Fungi - 135; Plants - 249; Viruses - 0; Other Eukaryotes - 2277 (source: NCBI BLink).
Link: InterPro Scan - TAIR