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16-0060-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11576425 [Map]; Strand: c
      • AT1G32170.1 - [+] show detail - xyloglucan endotransglucosylase/hydrolase 30
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 16-0060-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCTTG TGAGGAGTCC AGAGAATGCT ATAACGATGA 
    AACTCCTTAG AAGGATCAAA CCAGAGACGA TATCTCTCTT CACGACCTCT 
    ATGTGTACTT CCATTTCCGT ATAGATTTGT CTGAAACCTC CACGGCTTTC 
    CTTTTATGTT CCCTAGAAAC TCTATGTCTA ACTCGTCGTG TGTTTTCTCG 
    AACACGTCTC CGTTTGATGT CTACAACAAA ATCAAAATAT AAATTCAGCT 
    TTAGTAACCA TTTAACATAA AATTAGAATT TAAAGATTGG TGCTCTTTTT 
    CTTGGGAAAC ATAGAACTAT TTTCTTGGGA AAATTAATGA CTATTTTCTA 
    GGCAGCCAAA CAGGAAAAAA TGTGACATGG GTTCTTCGAC AAAAAGTGTG 
    GTATTGACGA TTTTCTCGGC CACAAAAAAA AAAANAAATT TTAANTNAAA 
    NNAAATNANT TNGTNNANNA NNTTTNNAAA NCAANTNNNN AAANCTTTNN 
    GCAANNATTT AANTACCTAA AAAAAANNAA AAANCTTTNT TNCCANNGGT 
    NNAAAAAACC AAAAAAAAAC CTTTTTNGGG GGTNNGAACC NAAAAAAAAN 
    CC

AT1G32170.1

Model type
Protein coding
Short Description
xyloglucan endotransglucosylase/hydrolase 30
Curator Summary
xyloglucan endotransglycosylase-related protein (XTR4)
Computational Description
xyloglucan endotransglucosylase/hydrolase 30 (XTH30); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 29 (TAIR:AT4G18990.1); Has 2058 Blast hits to 2046 proteins in 299 species: Archae - 2; Bacteria - 244; Metazoa - 0; Fungi - 398; Plants - 1344; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).
Link
InterPro Scan - TAIR