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16-0061-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8950570 [Map]; Strand: c
      • AT1G25480.1 - [+] show detail - Aluminium activated malate transporter family protein
        Distance: 0; Region: exon6 (CDS)
      • AT1G25490.1 - [+] show detail - ARM repeat superfamily protein
        Distance: -632; Region: promoter
    Flanking Genome Sequence: 16-0061-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCAGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCG AAGTANNGAT CGANGACGAC TCAATTGGGC 
    NGNTTGACCT ATCCCCGTTT CAGAGAGCCA TCGGTATAAC CTCGCCTGAT 
    GATTTTGGTG TANCTGAACC AAAACGGTAT TTGGATCGAA CCATNNGANN 
    CACCATNAAT TACAAGANAG AAGACACCGG GGATNACCAN CCNGGNCNGT 
    TNACAACNCT GCCNGNGNNN ANCTTCTCCA TTTTCTCCAC CTTTTCTCCA 
    AACAACCTNN NNACTTTGGC TCCTTCGTTT CCAACTCTTT GAAGTTCTTG 
    ACGAAAAGCC TGCCTTTTTT CTGGAGCTGC CTGCAAATCC CACACCAATT 
    GATATCACAA GTCTTATAGG GCATACGACA AGCATTGAAC TCAAAGAAAA 
    CCATTCACTA GTAACAACAG TAAACTAGGA GATCCCACTT TGCACCTACT 
    CAACAATTAT GTGACAAATA TCCGACTTCT CANAGTAACA GTCTANTTAA 
    TCACGAAGAG GTACTANTNN CATTTGAAGC AGGTTGGTAT AGTCTNTAAT 
    AACCATTNTA GCACCTNNTT TGCTATGATN GATAAAGNNG NNTTTAACAN 
    GAATATGGGN NNGNNNCCTG ANTNNNNNAA ANAATGCNNN CNTGCNTTGN 
    CNTGANCNTN AAANNNCNNN GCCTNACTGN NCCACTNA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8950619 [Map]; Strand: c
      • AT1G25480.1 - [+] show detail - Aluminium activated malate transporter family protein
        Distance: 0; Region: exon6 (CDS)
      • AT1G25490.1 - [+] show detail - ARM repeat superfamily protein
        Distance: -583; Region: promoter
    Flanking Genome Sequence: 16-0061-1 - 3-prime edge 
    GATATGGGAC AATAACAACA ACCCTCATCA TCAGAATCAA CACGCTGGTA 
    ATGATTCTCA GCTATGGATA TCAACAGAGA GTATGATGCT TAGGAACCGC 
    GAAAACTGGC CAAGCGTCTC TTTCATAGGC GGTTCTATGA TCAATGAGAT 
    AGAATCCAAA GTATATGAAA GTGCGAGTTC TTTGTCGCTA GCTACATTTG 
    CGTCTCTTTT GATCGAGTTT GTTGCAAGGC TCCAAAATAT TGTTAACGCG 
    TATGAGGAAC TAAGCACTAA AGCCGATTTC AAAGAACAAG TTAGCGAGAC 
    ACGGATATAG AAAAAGCTGG ACTCTGGACC AGACTCAGTA GCTGCTTCAG 
    CTCCAGGGAT ATAGTTGATT TTGTATAGAA AATTATATAC ATTATTGCTT 
    TGTTTGTTTG CTGTCTTGAA ATAAGTTCCT AATTCCTTTT TGTTTTGTTT 
    TGGCAAAGTC ATAAACTCAA TTGGAAAGTT TTGTTTTTCT TTCATTGTAT 
    CAATTGAATC AACTGTTTAG ATTTTTTAAA GCAAAAAATT GATTAAAGCC 
    CAACATAACC CAATCCTAAN AAAGCCCAAT ATGGCCCAAT TAGACACTTT 
    CGNCATTTTA TATCTTTCCC TTTAATAAAT CCTTCNTNNN AAAATCNAAC 
    GCNNAANATT ATTTTTNTNG CTGNNAATTN NNNNNNNNGG NNNNNNCCNN 
    CCNNCCC

AT1G25480.1

Model type
Protein coding
Short Description
Aluminium activated malate transporter family protein
Computational Description
Aluminium activated malate transporter family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to aluminum ion; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Malate transporter, aliminium toerance (InterPro:IPR020966); BEST Arabidopsis thaliana protein match is: Aluminium activated malate transporter family protein (TAIR:AT1G68600.1); Has 866 Blast hits to 864 proteins in 262 species: Archae - 0; Bacteria - 474; Metazoa - 0; Fungi - 26; Plants - 341; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25490.1

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Curator Summary
One of three genes encoding phosphoprotein phosphatase 2A regulatory subunit A; Recessive ethylene-response mutant EER1 displays increased ethylene sensitivity in the hypocotyl and stem
Computational Description
ROOTS CURL IN NPA (RCN1); FUNCTIONS IN: protein phosphatase type 2A regulator activity; INVOLVED IN: response to ethylene stimulus, abscisic acid mediated signaling pathway, regulation of stomatal movement, positive regulation of abscisic acid mediated signaling pathway, auxin polar transport; LOCATED IN: cell wall, plasma membrane, protein phosphatase type 2A complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), HEAT, type 2 (InterPro:IPR021133), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: protein phosphatase 2A subunit A2 (TAIR:AT3G25800.1); Has 2785 Blast hits to 1557 proteins in 250 species: Archae - 15; Bacteria - 74; Metazoa - 1400; Fungi - 416; Plants - 342; Viruses - 0; Other Eukaryotes - 538 (source: NCBI BLink).
Link
InterPro Scan - TAIR