Home
Mutant Lines
16-0095-1

16-0095-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 3; Position: 2957463 [Map]; Strand: w
- AT3G09640.1 - [+] show detail - ascorbate peroxidase 2
  Distance: 0; Region: exon5 (CDS)
- AT3G09640.2 - [+] show detail - ascorbate peroxidase 2
  Distance: 0; Region: exon6 (CDS)

GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCAAG ACACCTTGGT ATGTATGCTG CATCCAGAAA 
CAAAGACCTA TGTGCTTTTC TCAGTTCTGG CTCACACCAT TCTTTTACTT 
TCAGGGTCGG TGCCACAAGG AGCAGTTCAG GATTCGAGGG TGCATGGACA 
CCAAACCCGC TCATTTTTGA CAACTCCTAT TTCAAGTAAG ATCAGATTCT 
CTGCTTCTGC TTGCTCATAC TTGAATTGGA CATGAGCNTG AATTAGAAGC 
TCTTGAATCT TGATGGTTGT TAAACAGAGA GATACTAAGC GGAGAGAAAG 
AAGGACTTCT TCAACTACCA ACCGACAAGG CTCTTCTTGA TGATCCTCTC 
TTTCTCCCAT TTGTTGAAAA ATATGCTGCA GTAAGTTGTT CAACTCATCA 
TTTCATGATT CTCTCAGCAT ACATATATTG TCAATAGGAT AATATCACTG 
ACTGGATTGT TACTCTCAGG ATGAGGATGC CTTCTTCGAA GACTATACGG 
AAGCTCATCT AAAGTTGTCA GAACTCGGGT AAGTAACATA TAGAACAATC 
ATTCTCATCA ACATTTTATT TAACTTTCTT TCCTATTCTC CTAATGTAGT 
GTCGTAAACT TTGAATGGTC CTCAGAAACT CTTTTCATTT GCAAACACTT 
TGATCATAAT AACATAACTT ACGCTCATGT CATCATGTCC TTTGCAGGTT 
TGCTGACAAG GAGTAATCTG GAATCTGGTG TCATC

3 prime edge [+] show sequence
1. Chromosome: 3; Position: 2957470 [Map]; Strand: w
  - AT3G09640.1 - [+] show detail - ascorbate peroxidase 2
    Distance: 0; Region: intron5 (CDS)
  - AT3G09640.2 - [+] show detail - ascorbate peroxidase 2
    Distance: 0; Region: intron6 (CDS)
Flanking Genome Sequence: 16-0095-1 - 3-prime edge
```
ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTC 
TGCCAAGGTG TGTCCACCAG ACAATGCAAC GATATCTTTG TCATTGAGTC 
CCATCCGACC AAACACATCT CTTAGATGAT CCACACCTGA ATTTATGATT 
ATGAACATGT ATCTACAATC TGATACCTGA ATT
```

AT3G09640.1

Model type: Protein coding
Short Description: ascorbate peroxidase 2
Curator Summary: Encodes a cytosolic ascorbate peroxidase APX2. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.
Computational Description: ascorbate peroxidase 2 (APX2); CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: ascorbate peroxidase 1 (TAIR:AT1G07890.8); Has 8439 Blast hits to 8256 proteins in 1276 species: Archae - 55; Bacteria - 2395; Metazoa - 20; Fungi - 832; Plants - 3373; Viruses - 0; Other Eukaryotes - 1764 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G09640.2

Model type: Protein coding
Short Description: ascorbate peroxidase 2
Curator Summary: Encodes a cytosolic ascorbate peroxidase APX2. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.
Computational Description: ascorbate peroxidase 2 (APX2); CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: ascorbate peroxidase 1 (TAIR:AT1G07890.8); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR