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16-0111-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2390312 [Map]; Strand: w
      • AT3G07490.1 - [+] show detail - ARF-GAP domain 11
        Distance: -877; Region: promoter
    Flanking Genome Sequence: 16-0111-1 - 3-prime edge 
    TTTAAAGATG CCTAAGCTGT GTTTAGAAAC TACTGGTAGG AAAATAATAT 
    CTAAACAGTA TACTCAATAT GTTTTGTTAC TGAATCAAAC CCTGAACAAG 
    AATCGATCCT ACAAACAGAG TTTCTGTTTA CAAGGCTCAA ATCAAATCTA 
    CTAAACCATT GGTATAAGAT GCCAGATCCA TTCTACCTTA TTCCCTTTCC 
    CTAAAAGCAG AAACTGTGAT TACAATGCTC AGAGTATATT TAATGTTATC 
    TCAGCCTCAC CAAAGATGCA GTGGTTATGA GAATGAAAGA TCAAAACTCC 
    ACTAATTCTT CTAACTCAAC GGAAACACCT CCTTAGACAA TTAGACCCGA 
    GAATATAAAG GATGGCCTAT TAATCCTAAG CATACCGAAA CCGGGAAGAT 
    TACTATATGG TCTGTAAAAA GAATCTCATT CCAGTACTAA GAAGTCACAT 
    CATTCTATAT ACTCTCTTTC TCTATGCTTA AAGCTGTTGG CAAATTGAGC 
    TCGAGACCAA CAGATATCAA CACCAGGTAA CCACAATTCA ACACAATGTG 
    TTCAATAACC TCCTAGCATT TTCCAATTGC TTTTACCAAT CTCTAGATAT 
    AACACCATAG TCTCTAACCA ATCTAATGGA AGAAGAAGCA NCGAAAATGA 
    AATCAAGAAA ACAACATTCA CCCAGACTTG AAGCAGGGAA TCGTTTAAAC 
    AAGCAGAGTT CTTTACCACA TTACAA

AT3G07490.1

Model type
Protein coding
Short Description
ARF-GAP domain 11
Curator Summary
A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.
Computational Description
ARF-GAP domain 11 (AGD11); FUNCTIONS IN: calcium ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Parvalbumin (InterPro:IPR008080), EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT2G43290.1); Has 25143 Blast hits to 16842 proteins in 1503 species: Archae - 3; Bacteria - 170; Metazoa - 10890; Fungi - 4135; Plants - 6085; Viruses - 0; Other Eukaryotes - 3860 (source: NCBI BLink).
Link
InterPro Scan - TAIR