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16-0112-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26502819 [Map]; Strand: c
      • AT5G66330.1 - [+] show detail - Leucine-rich repeat (LRR) family protein
        Distance: -864; Region: promoter
      • AT5G66340.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 16-0112-1 - 5-prime edge 
    CATTCNACTN TGTTCCTGAT CCACTCTTCT CTCCCCTGTT TGTCTTTCTC 
    CATTATCTCT TCTTCCGGAG ACTGGAAAGA TGGCATTGGG CAACAAACGC 
    ACTTCGTCGA CGATTTCAAT AGTAATCTGG ATAAGCATAA ATCACAGCTT 
    AGAGGAAAAT AGAAGGTCAG AGAAGAGAGT ATCGTGATCG ATGTAAGCAC 
    TAGTTTCTGC TTTGTAATTG TGCATCTTTC TAACTATTAT AGGGATGGTC 
    TTTGAGTTCA AGATTAACAA AGAAACAGTG AGACAATTAT TCGTTAAGAA 
    CAACATACCG ACGAAAAGCA AGGACGACAA CAAATTCAGA TGGTGCCAAT 
    AGATTATGTT AGTACCTTTT GTTTTACCAA TCTCTGCATA GTCTTAGTGA 
    CCCGTTAGGA TGATTTAGTG TCCCACATGG CTTAGGTTTA GAGTTTTAGA 
    CACCTAACGC TAATGAGTGA TCCTATCATA TATGAACATT TTCGTCGTCT 
    TCCATAGATT TAAAGTTAGT TAGAGCCAAT GATTTGGAAC CTTTGCTTGC 
    AACAGCTGCA CATTCATTAA CCCATCAACC TTGCTTCCTG TAAGGCTATA 
    ATTACTTCTT CTATCTATGT CATCAACCAA GACTAGTTTA GATTTTGACA 
    ACTTCTGGTC AAATGGGTAC GTCACATATG GGAGAAAATG AAATAAATTG 
    NAAAGTTTAT TAGTCAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26502935 [Map]; Strand: c
      • AT5G66330.1 - [+] show detail - Leucine-rich repeat (LRR) family protein
        Distance: -980; Region: promoter
      • AT5G66340.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 16-0112-1 - 3-prime edge 
    GTCGAATGTA TCCAAAGTTA GTTATGTGAT TTGCTCGTGA GTCTCATGGA 
    GAGAGAAAAA CAGAGGCCCA TACCTCTAGG GCTTAGTAGT TTTGTTTTAC 
    CCAGCAACAG CATGGCTTAG TTTTGGGCTA CNTTCATTAT TTGGTCACCT 
    GAGGACTACA GTGTCGTCTT CTCTTTATGC AGCGAGCCTG CGACACTCAA 
    ATTAAAAATT CGGTTTGGAA AGCT

AT5G66330.1

Model type
Protein coding
Short Description
Leucine-rich repeat (LRR) family protein
Computational Description
Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT2G15320.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66340.1

Model type
Protein coding
Computational Description
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR