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16-0128-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30042017 [Map]; Strand: w
      • AT1G79850.1 - [+] show detail - ribosomal protein S17
        Distance: -65; Region: promoter
    Flanking Genome Sequence: 16-0128-1 - 5-prime edge 
    GGNAANGNAA CANAGCCGNN AGTACNNCNN CTATTTANAA GGGATGNNTA 
    CANTATACAG GATGGTAAAT GGGNTTNACA ATACAATGGG CCTAATNTTA 
    AAAGCCCANA TTTTTATAAA AAGGAATTTA CAAAAGCCCT TTTGTAAAGT 
    TTTTGAATCC TAAAAATAAT TAAATAATCA ATAAATCTGT CTTCGCTCTT 
    TTTTGCGCCT AATTTTCCAC ACAAATATNA ATGCCGTGCC GTTGGACTCT 
    TGACACCNCC TANGGTTTNG AGGTATNANG NCTTNTTGGT NGNGAAGANG 
    NGGAGNTTNT NNTTTNTNAA NNGANNATAC NGGNNATNCT TNTTANATNA 
    AANNNNNGNG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30041901 [Map]; Strand: w
      • AT1G79850.1 - [+] show detail - ribosomal protein S17
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 16-0128-1 - 3-prime edge 
    CATTTCATCG ATTCGATTCC AAATCGGAAG GATGATAACG ACGTCCCTAA 
    CCTCATCTCT GCAAGCTCTC AAGCT

AT1G79850.1

Model type
Protein coding
Short Description
ribosomal protein S17
Curator Summary
nuclear-encoded 30S chloroplast ribosomal protein S17
Computational Description
ribosomal protein S17 (RPS17); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, plastid small ribosomal subunit, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S17, conserved site (InterPro:IPR019979), Ribosomal protein S17 (InterPro:IPR000266); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT1G49400.1); Has 7449 Blast hits to 7449 proteins in 2625 species: Archae - 136; Bacteria - 5329; Metazoa - 5; Fungi - 63; Plants - 102; Viruses - 0; Other Eukaryotes - 1814 (source: NCBI BLink).
Link
InterPro Scan - TAIR