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Mutant Lines
16-0157-1

16-0157-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 1; Position: 8867962 [Map]; Strand: w
- AT1G25290.1 - [+] show detail - RHOMBOID-like protein 10
  Distance: 0; Region: intron3 (CDS)
- AT1G25290.2 - [+] show detail - RHOMBOID-like protein 10
  Distance: 0; Region: intron3 (CDS)

GNACTGGGGA TGTAANATAN GAAGAANACA CGGAGACTGN CNANNACGGG 
NGGCCNAGAA CNGCTGTGCC ATANAGGCAG ATATAGGAGA GTTAATCNAA 
GNGAGGTCAG ANTNTGGAGA CCTGGNTNNA GCGNTATGNG CTTCATGCNG 
AATCCTATGC ATNTCATGGG CTGTTTCTAA CCAATCNTTC ANCNTNNGTA 
ATATCTAANC ATTGNTNTGN ATGGCTAAAC TGNATCTNCT TTGNTTGAGA 
TAAATTGCTA TTCTTTGAAT T

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 8335735 [Map]; Strand: c
  - AT1G23480.1 - [+] show detail - cellulose synthase-like A3
    Distance: 0; Region: intron7 (CDS)
  - AT1G23480.3 - [+] show detail - cellulose synthase-like A3
    Distance: 0; Region: intron5 (CDS)
  - AT1G23480.2 - [+] show detail - cellulose synthase-like A3
    Distance: 0; Region: intron6 (CDS)
  - AT1G23490.1 - [+] show detail - ADP-ribosylation factor 1
    Distance: -948; Region: promoter
Flanking Genome Sequence: 16-0157-1 - 3-prime edge
```
ACGCAATCGC TACACCTCGG TAACAACATC TCTACTGTTC AAGTAAAACT 
CTGTTTTCTC ATTTCCTAGT ATGATAAAAA GTTTGACATA TATTGTCTAC 
TGCAGATCAC NTCCATCTTC TTGTCTTTTG GATCTTATTC GAGAATGTAA 
TGTCGATGCA TCGCACAAAA GCGACATTCA TCGGGTTACT AGAGGCAGGA 
CGGGTTAACG AATGGGTTGT TACTGAAAAA TTAGGTGACA CTCTCAAGTC 
TAAGTTAATA GGTAAAGCTA CAACTAAGCT
```

AT1G23480.1

Model type: Protein coding
Short Description: cellulose synthase-like A3
Curator Summary: encodes a gene similar to cellulose synthase
Computational Description: cellulose synthase-like A3 (CSLA03); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT4G13410.1); Has 4758 Blast hits to 4752 proteins in 1373 species: Archae - 199; Bacteria - 3673; Metazoa - 9; Fungi - 91; Plants - 500; Viruses - 11; Other Eukaryotes - 275 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G23480.2

Model type: Protein coding
Short Description: cellulose synthase-like A3
Curator Summary: encodes a gene similar to cellulose synthase
Computational Description: cellulose synthase-like A3 (CSLA03); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT4G13410.1); Has 4744 Blast hits to 4738 proteins in 1369 species: Archae - 198; Bacteria - 3660; Metazoa - 9; Fungi - 91; Plants - 500; Viruses - 11; Other Eukaryotes - 275 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G23480.3

Model type: Protein coding
Short Description: cellulose synthase-like A3
Curator Summary: encodes a gene similar to cellulose synthase
Computational Description: cellulose synthase-like A3 (CSLA03); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT4G13410.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G23490.1

Model type: Protein coding
Short Description: ADP-ribosylation factor 1
Curator Summary: Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. A member of ARF GTPase family. Arabidopsis has 21 known members, known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.
Computational Description: ADP-ribosylation factor 1 (ARF1); FUNCTIONS IN: protein binding, phospholipase activator activity, GTP binding; INVOLVED IN: response to cadmium ion, N-terminal protein myristoylation; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: Ras-related small GTP-binding family protein (TAIR:AT1G70490.2); Has 15036 Blast hits to 15017 proteins in 510 species: Archae - 14; Bacteria - 52; Metazoa - 7716; Fungi - 1944; Plants - 2035; Viruses - 3; Other Eukaryotes - 3272 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G25290.1

Model type: Protein coding
Short Description: RHOMBOID-like protein 10
Computational Description: RHOMBOID-like protein 10 (RBL10); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like protein 5 (TAIR:AT1G52580.1); Has 5007 Blast hits to 5007 proteins in 1743 species: Archae - 94; Bacteria - 3513; Metazoa - 216; Fungi - 161; Plants - 305; Viruses - 0; Other Eukaryotes - 718 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G25290.2

Model type: Protein coding
Short Description: RHOMBOID-like protein 10
Computational Description: RHOMBOID-like protein 10 (RBL10); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like protein 5 (TAIR:AT1G52580.1).
Link: InterPro Scan - TAIR