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16-0167-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2444647 [Map]; Strand: w
      • AT3G07650.4 - [+] show detail - CONSTANS-like 9
        Distance: 229; Region: intergenic
      • AT3G07660.1 - [+] show detail - Kinase-related protein of unknown function (DUF1296)
        Distance: 131; Region: intergenic
    Flanking Genome Sequence: 16-0167-1 - 5-prime edge 
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCGA TTGAGATGCA AAACAGTAGT TTTCAAGATG 
    ACATATGGAC CAAAAGTTTT TAACATTTAT ATTTGGAGTA TTTCGGATTT 
    TACAACTTAA TGTGAATTTT CTTGAAGACT CATATTCACA AGCCTTAATT 
    TTCGAATTGA GGAATAAACA TTCAGAGAAA GTTGATTCGC GAGCAAGAAA 
    TTTGTCCAAT TTGATTGCTG ACTCGGATTT GAAAACATTG ACCAAAGGCT 
    AAGAAAAGAA GGAAGAGAGG AAGAGTCTTC AGATACAGAC TCAGGTAGCA 
    AAGTTCTTGT CTTAGCTCAG AAACTTAAAA AGAGAGCTAA AAAAGACCTC 
    TTAAAAGCTA AGAAAGAAAA AAATTTGCTA AATCAAAAGA AAAAAAAAAN 
    NNTTTGNAAA NCCCCAAANC NCNGGTTTAA NANAANNCCT TNCCCTNCCC 
    TNANNANNAT NCTNTNNGAA AATCNCCTTN ANGCTNAANC CTTAAACTTN 
    ANAGNTTCNT NTTTTGGGAA ATTGGTTAAA GGGCCCNCNC CCCCCCCCCC 
    NGGTAAANAA AACCCCCCCC CCNTNTNTNT TCCCGGATTN CNGGGGANTT 
    NAAANNTNGG GGAATNTNAA AAACCTTTTT CNCCTTTAAA CNCCCGGGNA 
    NAAAAATNAC TGGGCCAATT CNTNTGTTTT TGTTNGGGCT GNGGAAAAAN 
    NTTNGGGGCG GGGGCCNCCT TTN

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2444640 [Map]; Strand: w
      • AT3G07650.4 - [+] show detail - CONSTANS-like 9
        Distance: 222; Region: intergenic
      • AT3G07660.1 - [+] show detail - Kinase-related protein of unknown function (DUF1296)
        Distance: 138; Region: intergenic
    Flanking Genome Sequence: 16-0167-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCA 
    CTTTTGATAA GTGTTCAAAA TTGACATAGT AGAAGCTAAG TTTAAGTAAA 
    CAGCGATAAA GCGCCTAAAC TCACATAAAT GGACTCCCCT TTATAATCTG 
    ACATTTAAAT AATAAAGTTC AGATGTTTTG CATTGCCTCA TTGTTGGATC 
    AACCTCTTGA AGTTACTACA AACCAAAATC TCGTTAAACT TGAACTAGTA 
    CTAGTCGGTT GTTACAGAAC GAGACTTAGG TTAAGTGGTA CCACATAACT 
    TTCTTTGTCT ATAGAAGAAT GTGGATAATG TCTTTAATTT ACAAGAATGC 
    CGAGTACAAA ACAGAAAAAC ATTTATGAGT ATACAAACAA ATACAAAGGC 
    ATATACAACA ATCACATATT GTTTAAATTA CTCTAAATCT CCTTCCCTGC 
    CTTTTTAACT ACCAAGAGAA GAACAAAATT CATGGAACCC TGATCAGTGT 
    GAGACGCCTG AAGAAGAAGA AGAAGAAACC GGAGTTTGGA CAAGGAAAGT 
    CAGAGAATAA TCCCTCTGGT CAAGAATGAA GCT

AT3G07650.4

Model type
Protein coding
Short Description
CONSTANS-like 9
Curator Summary
This gene belongs to the CO (CONSTANS) gene family. This gene family is divided in three subgroups: groups III, to which COL9 belongs, is characterised by one B-box (supposed to regulate protein-protein interactions) and a second diverged zinc finger. COL9 downregulates expression of CO (CONSTANS) as well as FT and SOC1 which are known regulatory targets of CO.
Computational Description
CONSTANS-like 9 (COL9); CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT5G48250.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G07660.1

Model type
Protein coding
Short Description
Kinase-related protein of unknown function (DUF1296)
Computational Description
Kinase-related protein of unknown function (DUF1296); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1296 (InterPro:IPR009719); BEST Arabidopsis thaliana protein match is: Kinase-related protein of unknown function (DUF1296) (TAIR:AT3G13990.1); Has 3086 Blast hits to 1914 proteins in 327 species: Archae - 2; Bacteria - 372; Metazoa - 1089; Fungi - 466; Plants - 245; Viruses - 13; Other Eukaryotes - 899 (source: NCBI BLink).
Link
InterPro Scan - TAIR