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16-0182-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 281867 [Map]; Strand: c
      • AT5G01740.1 - [+] show detail - Nuclear transport factor 2 (NTF2) family protein
        Distance: 422; Region: intergenic
      • AT5G01747.1 - [+] show detail - MIR164/MIR164B; miRNA
        Distance: -5719; Region: intergenic
    Flanking Genome Sequence: 16-0182-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
    TGTATAAGAC GCAGGGGCTT GTAACGACTG TAGACAAACC CTTATAGAGG
    CTTCTTTATG GGCCTTTGTT GGGCCTAATA AGTAAAGGGT TAACTACTAA
    TCTTTCATCA AAGTATGTTG GGTTTCTCTA CCAAGCCCGA TTCAGGCTCT
    TCCACNGGCT AAATAACTAA AAGTCAAATA AAATGATGTG AAACTTTAAA
    ACGTGAACCC AAAAAATATG ATTTCGAATG TAGTAGATTC GGTTTTCTCC
    TGTGGTTTGA TTAATCGACC ATCCCAGCTT ATGTTAAAAT AATTAAATTT
    CTGTTATTCA ATTATATATT TTTTAATAAA TAGTCTTAAA TCTCGTGTTA
    TTGCTGTTAT AAATATGTAT TAAAATATAA ATTATTATTA TAAATATTAT
    ACACTGTGTT ATTTTAAATA ATATGAATAT TTTGTCACTT AGTCATATGC
    TTCAATTTTT TTCTACAACT CCGTTTTTTT TTNGTTTNGC TAAATTTNGN
    AAATNTTTTN TAAAAGGGAA ACAATTTAGG TTACAAACNT ANTTTGAAAC
    CCAAAAATTT GATTCCCTGG CAAAAAAAAA ACANCNCCNT TCTTAAATTC
    GNTTTTAANG GGTNTNTNAA TTACCAANCC NGGCNGNNNA CNANNCCTGN
    NCCNNAAAAA AAA

AT5G01740.1

Model type
Protein coding
Short Description
Nuclear transport factor 2 (NTF2) family protein
Computational Description
Nuclear transport factor 2 (NTF2) family protein; CONTAINS InterPro DOMAIN/s: Wound-induced protein, Wun1 (InterPro:IPR009798); BEST Arabidopsis thaliana protein match is: senescence associated gene 20 (TAIR:AT3G10985.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01747.1

Model type
miRNA
Short Description
MIR164/MIR164B; miRNA
Curator Summary
Encodes a microRNA that targets several genes containing NAC domains including NAC1. Overexpression leads to decreased NAC1 mRNA and reduced lateral roots. Loss of function mutants have increased NAC1 and increased number of lateral roots. Also targets ORE1 to negatively regulate the timing of leaf senescence. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGGAGAAGCAGGGCACGUGCA
Link
InterPro Scan - TAIR