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16-0185-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1639523 [Map]; Strand: c
      • AT4G03695.1 - [+] show detail - pseudogene, hypothetical protein
        Distance: -941; Region: promoter
    Flanking Genome Sequence: 16-0185-1 - 5-prime edge 
    GACNNGGAGG ANANCAATGG AGGNAAGTNT GGCAGANATG ACCAGAGTCA 
    TGGGGTCTTA ANANTGGAGC GNCTATNCTN TAATATTGAG CCAANGNNTT 
    TTGAAANNCG AGGNAAAGAT GNGNGNNNCC GAACCCNGAC CANTTAGNNC 
    NCCGGCCCGG NGGATATACA TAACCCNGCC CGTATTAATG ACCTCTTAAG 
    TTTTTTAAAT ATATAGTACA CTCTCCACTG CTTATGCTTG GACTGCTACA 
    AATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 232366 [Map]; Strand: w
      • AT1G01640.1 - [+] show detail - BTB/POZ domain-containing protein
        Distance: 0; Region: intron1 (5UTR)
      • AT1G01640.2 - [+] show detail - BTB/POZ domain-containing protein
        Distance: -44; Region: promoter
    Flanking Genome Sequence: 16-0185-1 - 3-prime edge 
    AGCCGATCTC GCTATCAGTC GGTAATATAC ACTATCATTC TACTTTCCTA 
    ATTTCTCTTC TTCTTTTTGT TTTCTTTGAG AATTGCATGA CAAACCCTTG 
    GAAAAGGGTT GTTTTAAAAT CATCATGAAA TTTGAGAATA TGATCNGGTG 
    GCCTTGATTG AATTTTCGTT TTGTGTGAGT GGTCTTTCTG TTTGAGTTTT 
    AAAATTTCGG AGAGTGGCGT TTTAAGATTC GATACCATAT CCTTGGATAA 
    CTATTAGCCA GAACAATACT TTCAAATTTT AAAGCT

AT1G01640.1

Model type
Protein coding
Short Description
BTB/POZ domain-containing protein
Curator Summary
Putative role in flower development. Comparison of SALK_011721C to Columbia wild type resulted in a trend toward earlier flowering in the mutant (P=0.1) (Stapleton and Woodruff 2009, personal communication).
Computational Description
BTB/POZ domain-containing protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT3G56230.1); Has 4339 Blast hits to 4265 proteins in 145 species: Archae - 0; Bacteria - 0; Metazoa - 3351; Fungi - 8; Plants - 720; Viruses - 35; Other Eukaryotes - 225 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G01640.2

Model type
Protein coding
Short Description
BTB/POZ domain-containing protein
Curator Summary
Putative role in flower development. Comparison of SALK_011721C to Columbia wild type resulted in a trend toward earlier flowering in the mutant (P=0.1) (Stapleton and Woodruff 2009, personal communication).
Computational Description
BTB/POZ domain-containing protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT3G56230.1); Has 4339 Blast hits to 4265 proteins in 145 species: Archae - 0; Bacteria - 0; Metazoa - 3351; Fungi - 8; Plants - 720; Viruses - 35; Other Eukaryotes - 225 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G03695.1

Model type
Pseudogene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR