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16-0186-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 6942116 [Map]; Strand: w
      • AT1G20020.1 - [+] show detail - ferredoxin-NADP(+)-oxidoreductase 2
        Distance: -601; Region: promoter
      • AT1G20020.2 - [+] show detail - ferredoxin-NADP(+)-oxidoreductase 2
        Distance: -601; Region: promoter
      • AT1G20020.3 - [+] show detail - ferredoxin-NADP(+)-oxidoreductase 2
        Distance: -601; Region: promoter
    Flanking Genome Sequence: 16-0186-1 - 5-prime edge
    GCTGGGAGGT TCANCNTGAA AACATAGATA TAGCATTCGG GACAGACTAA 
    AAGGGACCGT NTCGCGTATA GTNCAGGTGA TGCAACCGGA TAGACNAAAC
    ATCTTGGAAA CAAGAGAGAG CNGTTGGATA GTACCAACTC TCTTGGAAGT
    GACATCATCT CCATATGTAA ACTAGATTCC CTAAAACAAA ACAATCCACA
    ACTTCAATTT TGTATATACA TTCATCATTT TGCAAATGTG GATATATAGG
    CATTGATTGA AAAGTGAAAT GGTAAAATAT GATATAATTT TGATCAGGTA
    GGAAAGTTAT GGGTGATAAT ATCTTGTCCA AAAATAAAAC ATTGTAAAGT
    ATATTTAAAG GAAAGGGCCC TTGTATAAAG CT
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 6942052 [Map]; Strand: w
      • AT1G20020.1 - [+] show detail - ferredoxin-NADP(+)-oxidoreductase 2
        Distance: -665; Region: promoter
      • AT1G20020.2 - [+] show detail - ferredoxin-NADP(+)-oxidoreductase 2
        Distance: -665; Region: promoter
      • AT1G20020.3 - [+] show detail - ferredoxin-NADP(+)-oxidoreductase 2
        Distance: -665; Region: promoter
    Flanking Genome Sequence: 16-0186-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
    TGCTCCCAGC TAAACTCAGC TGGTATGTTC TCGACCGGAA AACATCAGGT
    CCTAGTACAG CTAAGAGCTA ACAATCTCTT GGTGGCTGTT CCCTTGCTCC
    ACTTACATAG TTATATGTCT CTACGTTCAA GCT

AT1G20020.1

Model type
Protein coding
Short Description
ferredoxin-NADP(+)-oxidoreductase 2
Curator Summary
Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the stroma
Computational Description
ferredoxin-NADP(+)-oxidoreductase 2 (FNR2); FUNCTIONS IN: oxidoreductase activity, poly(U) RNA binding, NADPH dehydrogenase activity; INVOLVED IN: oxidation reduction, defense response to fungus, incompatible interaction, defense response to bacterium; LOCATED IN: thylakoid, chloroplast thylakoid membrane, apoplast, chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Oxidoreductase, FAD-binding domain (InterPro:IPR008333), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), Ferredoxin--NADP reductase (InterPro:IPR012146); BEST Arabidopsis thaliana protein match is: ferredoxin-NADP(+)-oxidoreductase 1 (TAIR:AT5G66190.1); Has 6774 Blast hits to 6774 proteins in 1708 species: Archae - 20; Bacteria - 3604; Metazoa - 802; Fungi - 759; Plants - 616; Viruses - 0; Other Eukaryotes - 973 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G20020.2

Model type
Protein coding
Short Description
ferredoxin-NADP(+)-oxidoreductase 2
Curator Summary
Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the stroma
Computational Description
LEAF FNR 2 (ATLFNR2); FUNCTIONS IN: oxidoreductase activity, poly(U) RNA binding, NADPH dehydrogenase activity; INVOLVED IN: oxidation reduction, defense response to fungus, incompatible interaction, defense response to bacterium; LOCATED IN: thylakoid, chloroplast thylakoid membrane, apoplast, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), Ferredoxin--NADP reductase (InterPro:IPR012146); BEST Arabidopsis thaliana protein match is: ferredoxin-NADP(+)-oxidoreductase 1 (TAIR:AT5G66190.1); Has 6542 Blast hits to 6542 proteins in 1635 species: Archae - 18; Bacteria - 3429; Metazoa - 796; Fungi - 693; Plants - 607; Viruses - 0; Other Eukaryotes - 999 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G20020.3

Model type
Protein coding
Short Description
ferredoxin-NADP(+)-oxidoreductase 2
Curator Summary
Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the stroma
Computational Description
LEAF FNR 2 (ATLFNR2); FUNCTIONS IN: oxidoreductase activity, poly(U) RNA binding, NADPH dehydrogenase activity; INVOLVED IN: oxidation reduction, defense response to fungus, incompatible interaction, defense response to bacterium; LOCATED IN: thylakoid, chloroplast thylakoid membrane, apoplast, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Oxidoreductase, FAD-binding domain (InterPro:IPR008333), Ferredoxin--NADP reductase (InterPro:IPR012146), Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709); BEST Arabidopsis thaliana protein match is: ferredoxin-NADP(+)-oxidoreductase 1 (TAIR:AT5G66190.1); Has 6779 Blast hits to 6779 proteins in 1702 species: Archae - 20; Bacteria - 3601; Metazoa - 804; Fungi - 729; Plants - 614; Viruses - 0; Other Eukaryotes - 1011 (source: NCBI BLink).
Link
InterPro Scan - TAIR