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16-0256-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13544 [Map]; Strand: w
      • AT4G00026.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -185; Region: promoter
      • AT4G00030.1 - [+] show detail - Plastid-lipid associated protein PAP / fibrillin family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 16-0256-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCAT GGNNNTGNTA NGGGGGNANN NTGGCCCTNG 
    NGNACTCGCA TGTCGGCNCT GNTCTCCTCC CTCGCGCCGC ACTCGTCGTG 
    CCGGTTTTCG AACAAGCTGC TCGATCTTCG CGAATCCAGC ACAGCGAGCC 
    AAGAGGAAGC TGCTTGAGCT GATCTCCGAG GAGGATCGAG GTCTGAGAAC 
    CCAGAAAGAC CCCAAGAAGC GAGATGAAAT CGTGAACGCC ATCGAATCCA 
    TGACGGTTAT CGGGCGCAGC TCCATCACCA CAGACGACTC TCTATCTGCT 
    ACGTGGCGGC TCTTGTGGAC GACGGAGAAG GAACAGTTGT TCATCATAGA 
    AAAGGCAGGC TTGTTTGGGA CGACCGCCGG AGACGTTTTG CAGGTGATCG 
    ATGTGAATAA ACGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 269232 [Map]; Strand: c
      • AT4G00650.1 - [+] show detail - FRIGIDA-like protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 16-0256-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTACCGACCG 
    TTTTAAACAT TCAAACGCCA ATTCGATGAT ATTCAGAAGC ACATCGAGTC 
    AATCGAAAAC GCAATTGATT CCAAACTCGA GAGTAACGGC GTTGTCCTCG 
    CCGCGCGGAA CAATAATTTC CATCAGCCGA TGTTATCGCC TCCGCGGAAC 
    AATGTATCTG TAGAAACCAC CGTCACTGTG AGCCAACCGT CTCAGGAGAT 
    TGTACCGGAG ACGTCGAATA AACCGGAGGG GGGACGTATG TGTGAGTTGA 
    TGTGTAGCAA AGGTCTGCGT AAATACATAT ACGCGAATAT CTCTGATCAA 
    GCTAAGTTAA TGGAAGAGAT TCCTTCAGCT TTGAAATTGG CCAAGGAGCC 
    AGCGAAGTTT GTATTGGATT GTATTGGCAA GTTTTACTTA CAAGGGCGTA 
    GAGCATTTAC TAAAGAGTCG CCTATGAGCT CTGCGAGACA AGTTTCGCTT 
    CTTATACTGG AGTCTTTTCT TCTAATGCCT GATCGTGGTA AAGGGAAGGT 
    GAAGATTGAG AGTTGGATTA AAGATGAGGC GGAGACGGCT GCTGTTGCTT 
    GGAGGAAAAG GTTGATGACT GAAGGAGGAT TANCTGCGGC TGANAAAATG 
    GATGCAAGGG GTTTGCTTTT ACTAGTTGCT TGTTTTGGGG GTCCTTCAAA 
    CTTTANGAGT ACANATTTGC TGGATTTGAT AANGATGAGT GGNTNAATGA 
    AATTGNCNGN GCTTTNAANC GGNNACANNN TNNTTGTNCC TNTGGNNTNN 
    NGNNCCNTAT NNTGNTNTNA NTNNGN

AT4G00026.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim21 (InterPro:IPR013261); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00030.1

Model type
Protein coding
Short Description
Plastid-lipid associated protein PAP / fibrillin family protein
Computational Description
Plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Plastid lipid-associated protein/fibrillin (InterPro:IPR006843); Has 184 Blast hits to 184 proteins in 36 species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00650.1

Model type
Protein coding
Short Description
FRIGIDA-like protein
Curator Summary
Encodes a major determinant of natural variation in Arabidopsis flowering time. Dominant alleles of FRI confer a vernalization requirement causing plants to overwinter vegetatively. Many early flowering accessions carry loss-of-function fri alleles .Twenty distinct haplotypes that contain non-functional FRI alleles have been identified and the distribution analyzed in over 190 accessions. The common lab strains- Col and Ler each carry loss of function mutations in FRI.
Computational Description
FRIGIDA (FRI); CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA-like protein (TAIR:AT5G48385.1); Has 841 Blast hits to 841 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 841; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR