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16-0270-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5427512 [Map]; Strand: c
      • AT4G08530.1 - [+] show detail - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfa...
        Distance: 5156; Region: intergenic
      • AT4G08540.1 - [+] show detail - DNA-directed RNA polymerase II protein
        Distance: -6133; Region: intergenic
    Flanking Genome Sequence: 16-0270-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT TACAGCCAAC CCACATAATT AGTTTAAAGC 
    ATGAATATTA CGAAGATATC AAAATGTTTT ATCTTGGTTT TTCCAAATAA 
    TTAAAATTTA TCTATAAACG TCCCCCAAAA AAGTTTACCA CATCTCCATG 
    TAATCCTCCG TTAAGCTGCC AAAATAATCC TTCTAGTAGC TACAAAAGTG 
    TACAAAACAC ATCCATTAAT GATAGTATTC AATTACTTCA TCTTTCAACT 
    AGTAATTTAA TAAGCCTAAT AAACAACGAT TAGTACCTTG GTCTTATGGA 
    GGGAAAATCA GCAACAAATG TGATATCCAA TCTTTCTTCT TTCAGCTTCT 
    CTAAAGTAAA ACTACAAAAT AAACAAATAA TAACTATATT GGTCATCATG 
    GAGAATCGTT TACATAACTA CGTTTGGTAA ATGAAATGTT TAGTTACTTT 
    GGTTTAGAAG TTCTTCTATC ACCATCACAA GCTAAACCGT TGTTGCTTGA 
    TACATCCTAT TCGAAAGAAA GATTGACGCA ATAATGGAAA ATATTATGAC 
    TTACGAATAA ATGTTAATGC ATCTTGTTTA ACAAATTTGC ATTATTTTAA 
    TTATTACTAT AGAACTTACA ATGTATCTAA TGGATCTGAC GTTTCCCGCG 
    ATTAGTGAAT T

AT4G08530.1

Model type
Protein coding
Short Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Curator Summary
Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.
Computational Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, petal, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); Has 27 Blast hits to 27 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G08540.1

Model type
Protein coding
Short Description
DNA-directed RNA polymerase II protein
Computational Description
DNA-directed RNA polymerase II protein; BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase II protein (TAIR:AT1G77890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR