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Mutant Lines
16-0288-1

16-0288-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 4; Position: 351696 [Map]; Strand: c
- AT4G00830.3 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: -320; Region: promoter
- AT4G00830.4 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: -320; Region: promoter
- AT4G00830.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: -327; Region: promoter
- AT4G00830.2 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: -350; Region: promoter

GGAATCATGT CACATGGGTA ATGTTCCTTG CTCGTGGATC TCAAGTTGCA 
AAGTTGCAGC TTTTTTTTAT GGTTTTCTTA ACAACTTCAC TTTGCATGTA 
AAAACAAATA AGGCCAGTGA AAATTTTCGT TATTTTATAC TAAAAAGATT 
CCATATAATT AACAAAGATA CCATGACAGA TTGATAAACT ATTGTTCACA 
TCCTAATTGC AACATTTATA GATAAAAATA TGAGCATACA TATTTATATA 
GAGATTAGTT AGTAAACACT TCCAATTATA AGCTACAAAT TCACACACAC 
AAACATAAAC ACAAACAAAA TTACACACCA ATCTCAAAGA TCATCAATAA 
AAACTGAAAA AGTTATGGTT CTTTTTGTCA AATTGTTTTT ATTTATATAT 
AACAAAAAAA AAGGGGNGNA AAAAANTCNT NNCCGGTNNA TTGGGTGGNA 
TNANGNAANN NTTTNANCCN TCNCCTNNAA TCNNTANNAA AACCNGGGNA 
NTTNTTTCCC CCNCCCCCAA AAAACTCATT CCANCAAAAA AAGNATTTNN 
ATGGTNGTTC CAANGCCCCC ATTGGNNANC CNCCTATACT TTGGAANCTG 
GAACTCCTTA AACTTTAACN ATCCNTTTGC TGNGGCAGCG GGGGAACCGN 
AAACAAAANC CGTTTTNTAN CTNAACGGAN ACGTTNTTTT TGGGGTGTNA 
AGGCCGTGNC CTTGGGGCCC TNTGAAACCG GTTNTACCCT AAAAATTCCG 
AN

3 prime edge [+] show sequence

Chromosome: 4; Position: 351812 [Map]; Strand: c
- AT4G00830.3 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: -204; Region: promoter
- AT4G00830.4 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: -204; Region: promoter
- AT4G00830.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: -211; Region: promoter
- AT4G00830.2 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: -234; Region: promoter

ATGATTCCTA CATGATCAGT CTTGTCTTCT ACGTTATACA CTACTACTCT 
ATATCCACCT AAATATAAAT TAAATGCTTC TGAAATGGAA TAATCTTAAA 
CAGCACGTAG TTTTCATATC ACCGAAGAAA ACGGCAGGGC TGGCAAAATC 
ACGAATTTTT TAAACAGGTA TAATAAAGAA CTAGAAAACA CTAGGCCCAA 
TAAAAACAGT GGGCTTAAAA AGCGTTTTGA TTTAGGGTTA ATGTGTGCGT 
AACATGTGAT CATAGCCCAC GAGTGGGTAA GGAGTGTCTT CATCTTCTTC 
TACCGGAGAT CGAGAAATAG CCGACGAAGT TTTGTTTTTT GAGTAAAACA 
GTATTCGTCG GACAACCGAA GCGAAATCCC TAATTTCCCA CAACACGAAA 
TACCAATTTC CCCAATTCGA AAACAAACAC GGTCTGGTAT GCCGAGAAAA 
TTCTCCATTT CTACTTTTCT TATACATTTG TTTTGGTTGT TTCATATAAA 
TACTTCTCAT CTTCTTCGAT TTTGTTACCC TCCCCCAAAC AATATAAAAA 
AAAAAGGATA AACCCTANTT TNTTTNTCAA ACTGTTTNAN GTTCAAATTT 
TTATTTCTGA NCTTANCTGG GGAGTAATTN GCTTTCTGGA AAAATGGGNG 
AGNNACAANC NNTAATTNNN TNGGNNGCTN NGGNNNNGGN TNGATNNTNN 
NNTNNGNNNN NNNTNNGGAN NNGGNNNNNN NTTTNTNCNT NCCCNNAACN 
NNGCTNTTTT NAAANNNNNN TTTN

AT4G00830.1

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G52660.2); Has 49171 Blast hits to 28860 proteins in 1092 species: Archae - 87; Bacteria - 2901; Metazoa - 24152; Fungi - 5892; Plants - 6872; Viruses - 415; Other Eukaryotes - 8852 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00830.2

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G52660.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00830.3

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition, domain 1 (InterPro:IPR003954); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G52660.2).
Link: InterPro Scan - TAIR

AT4G00830.4

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G52660.2).
Link: InterPro Scan - TAIR