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Mutant Lines
16-0294-1

16-0294-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 3; Position: 1956360 [Map]; Strand: c
- AT3G06420.1 - [+] show detail - Ubiquitin-like superfamily protein
  Distance: 0; Region: exon1 (5UTR)

NGGANNCTAC CACNACNGGT CAGNCCNCCC CGCGTGCNAN NCAAGNATCA 
ATAACGGACG TNTCGACANN NTNNNGNTGA ACACATGNNC NNNCTNTGNA 
TCTCTGCANA CAAAAAANCA CCAGATTCAG TNAGGAATCA GTTCGATAGT 
GAAATCTGNN AAGGGGATTG NTGNNAAGTG TTTNAAGGAT CAANTNTCCT 
CTGGTTGGCT CTACGATAAT NNNTATGTGA TTCTTAGGAA TTCTTTTTCC 
TTCGAAATGT GCTTCCTGAA GCAAAGTTTG NATNTNTGTT TGAGGATATN 
GATGAAAGAT TGAAGGAGTC GAANAACATC ANNGNGAAAT ATCCANATAG 
AATACCTGNA AGTTATTAGC ATAAATTTAA TGTTTGATTA GNTTCTTGGN 
GNNTCCGTCT TANTTGCCNA GCNANNGNGG ATCGGCCTTA GGGTCCNNAA 
TGANCCTANT CAATNAAAAA AAAGTCTTCA NTTNGACTTG CATNTCTCAA 
AATTTGCTAA AATCTTTGTT TNAANTCTTA AAATTTNTTC NCCANGGTNT 
TGATGGATAC AATNTGGGNA TNTGAAATTT NACTGANTTT GNGNGGNTTA 
GGNGNNGATC AAATNANTTN TGGGAAAATG GCGGGANACG ACTTCTTTAG 
TNGANATTTN NNTCTAATCA ACNAANAANG ACACANAACC NAATTGNAAT 
NAGGGGANTG GNATNCGGGN NTTGGTTNGG GNNTCTTNNT NCAGATGNNA 
NNNTNNNNGG GNAGGGGANN AANTANTAA

3 prime edge [+] show sequence
1. Chromosome: 3; Position: 1956472 [Map]; Strand: c
  - AT3G06420.1 - [+] show detail - Ubiquitin-like superfamily protein
    Distance: -75; Region: promoter
  - AT3G06430.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
    Distance: 0; Region: exon2 (3UTR)
Flanking Genome Sequence: 16-0294-1 - 3-prime edge
```
ATTATTTATA GAAAGACGAC ACGCACTTAT CCACTTTTTG GACTTGTCCG 
ATTTCTTGTG CACGTCACAG TTTATCTATG GGCCTCTATT CATAATTTTG 
GGCCCATCAA AATATATAAC ACGCATAGCT GCAAGAACAA TCAAGTGTAT 
TACAAACTCT TTTATTCTAC TCTTTCAAGT GAGACATCGA TCTCTCCTTG 
CAGAGAGAGA GAGAGAGAGA TTCACACACA NACCGCAATC ATCCTGCCGG 
AAGATTCTCC ATCTCTTTTG TAGCAACAGT GCGATCCATA AGCT
```

AT3G06420.1

Model type: Protein coding
Short Description: Ubiquitin-like superfamily protein
Computational Description: autophagy 8h (ATG8H); CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT3G15580.1); Has 1476 Blast hits to 1474 proteins in 273 species: Archae - 0; Bacteria - 0; Metazoa - 722; Fungi - 178; Plants - 301; Viruses - 3; Other Eukaryotes - 272 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G06430.1

Model type: Protein coding
Short Description: Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description: embryo defective 2750 (EMB2750); INVOLVED IN: pollen tube development, embryo development ending in seed dormancy; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G53170.1); Has 31867 Blast hits to 12007 proteins in 283 species: Archae - 3; Bacteria - 31; Metazoa - 288; Fungi - 376; Plants - 30037; Viruses - 0; Other Eukaryotes - 1132 (source: NCBI BLink).
Link: InterPro Scan - TAIR