Home
Mutant Lines
16-0349-1

16-0349-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 2; Position: 19663097 [Map]; Strand: w
  - AT2G48060.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
    Distance: -480; Region: promoter
  - AT2G48070.3 - [+] show detail - resistance to phytophthora 1
    Distance: 0; Region: intron1 (CDS)
  - AT2G48070.1 - [+] show detail - resistance to phytophthora 1
    Distance: 0; Region: intron1 (CDS)
  - AT2G48070.2 - [+] show detail - resistance to phytophthora 1
    Distance: 0; Region: intron1 (CDS)
Flanking Genome Sequence: 16-0349-1 - 5-prime edge
```
CTCTCGGTAA AGACTTGAAA AAGGTCCGCC TTTTTTCTAT ATCATTTACG 
ATTTTTCTGT TGAAACCATA GGAAGACATG AAAATGAAAA TGCACCATGT 
TAGATTGGTC TCTAGTGCTT GAACCTGTTG AAAGAGTTGC TCAAGCT
```

3 prime edge [+] show sequence

Chromosome: 2; Position: 19662981 [Map]; Strand: w
- AT2G48060.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
  Distance: -364; Region: promoter
- AT2G48070.3 - [+] show detail - resistance to phytophthora 1
  Distance: 0; Region: exon1 (CDS)
- AT2G48070.1 - [+] show detail - resistance to phytophthora 1
  Distance: 0; Region: exon1 (CDS)
- AT2G48070.2 - [+] show detail - resistance to phytophthora 1
  Distance: 0; Region: exon1 (CDS)

ACCGAGAGCA GAGGATGAGG AAGGGAGAGG AGATTCCGGC GGGTCGTCCT 
TGGGTTCTAA TCCGTCAGAG GTGGCGAAAA TACGGAAGGT GGATCTTCTT 
CTATGGCGAA AGCCATAAGT GAGAGCTATG GAAGAGGAGA CCCCATGGGT 
GCNTGCAGAG AGACCAACTC ATTCTCTCCT CCAATAATCG CGATAAGGAA 
GAAGAAACTT GTTGGCTTTA TTGAACCGGT CCAATTCTCA ACCGAACTCC 
GGTATTCCAA ATTAAAAGCC AGCAATCAAT AATTGAATCT CGAGCCCACG 
ACGGTTTGAT TGGTTTAGCC ATTTCTCGGC GCTAAATATA ATTTATTAAA 
ATGATGATTA TTGCGAGAAG AAAAGATCTT TCTTTGATTT TTGCTTGTGG 
ATTTGGATTT CCAGTTTCCA ATTCTCTCAA ATTTGCAATC CACCTTCAAA 
TTCACACACA TCTTCAACAG CTACCTTTTC GGGAACTTGC TAGAATT

AT2G48060.1

Model type: Protein coding
Computational Description: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341 proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa - 318; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G48070.1

Model type: Protein coding
Short Description: resistance to phytophthora 1
Curator Summary: Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description: RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G48070.2

Model type: Protein coding
Short Description: resistance to phytophthora 1
Curator Summary: Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description: RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G48070.3

Model type: Protein coding
Short Description: resistance to phytophthora 1
Curator Summary: Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description: RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages.
Link: InterPro Scan - TAIR