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16-0364-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7579479 [Map]; Strand: c
      • AT1G21620.1 - [+] show detail - pumilio 20
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 16-0364-1 - 3-prime edge 
    TTGCTGACAT CAGATCCCGA TTACTTCTTG ATGATCGCAA GAAACATGAA 
    CGGCTCCAAA CGCATTCAGA AACTTCTCGG AAAAACAGAT GACGTGGACG 
    CTTTATTCGC CGCCGCTATC TTGCGCCGCT TCCTCCACAT CATCACCGAC 
    AAGTACGCGT CGTACGTGGT GAGACGGGGG ATGACAGTTT TCGATAAGAA 
    GAAGAAAAAA GCAATGTACG AGCACATTCT CCACTACGCG AGCCACATAG 
    CGCGTGATAA ACACGGTAAC CTCGCGCTCA ACGACATCAT AACCGACGCG 
    GTACAGAAAC AAGCTCTTTG ACGTAATCGC GCACAAAGCT CTTGTACTAA 
    GCAACGATGC TTATGGGAAC TTTGTGATAC AACGCGTGCT TAAACTGAAT 
    GACTTGCGTA GCAAGAACAA CATCGTCGTT AGTCTACGTG GCCACTTTGT 
    TGATCTCTCG TTTCAGAAAT ATGGAAGCTA CGTTGTGGAT GTGCTTTTGG 
    AGACGAAGGA GTCAATGGTT GTGGTGGTGG AGGAGCTTAT GGAATGTGGA 
    GGAGATATGT TGATGAGGTT GGCGAGGAAT GAGTATGGGA ATTTCTTGGT 
    GTGCAAGGCA CTGANAGTCA CGCANAAGGA GATGGTTAGG ACTGATCTGT 
    TTTGGGGTTT GGTGCATAAN CTNAAGCCTT TTNACAATCT NTTGCNTNGG 
    NCTNNNGGAA AGAACATTGN NTNCNTNTTA AACTNNAT

AT1G21620.1

Model type
Protein coding
Short Description
pumilio 20
Curator Summary
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational Description
pumilio 20 (PUM20); FUNCTIONS IN: RNA binding, binding; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 18 (TAIR:AT5G60110.1); Has 2073 Blast hits to 1204 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 801; Fungi - 431; Plants - 579; Viruses - 0; Other Eukaryotes - 262 (source: NCBI BLink).
Link
InterPro Scan - TAIR