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16-0391-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8180380 [Map]; Strand: w
      • AT1G23074.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 2384; Region: intergenic
      • AT1G23080.1 - [+] show detail - Auxin efflux carrier family protein
        Distance: 197; Region: intergenic
    Flanking Genome Sequence: 16-0391-1 - 5-prime edge
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCTA CCTAATTTTA AACAAAATGA AAGTAGAAAG
    TAAGAGAAAT TATTGCAAGT CAAAATATAT GAACAAAGCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8180368 [Map]; Strand: w
      • AT1G23074.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 2372; Region: intergenic
      • AT1G23080.1 - [+] show detail - Auxin efflux carrier family protein
        Distance: 209; Region: intergenic
    Flanking Genome Sequence: 16-0391-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
    GTATTCATTT TTTGTTTGTT TTGTGTTTTG TGTAGGTTAC TTCTTTCGAC
    GAAAGTGTGT TTTTGTGGAT TTTCCTTTCT CATCTAGTAT ACATTGCTCT
    CACAAAAGTA AGGACTGTTT TATTCCAATT AAATAAAGAA AATGACCTCT
    TAGTTAGCGA TTAGGCGTGA AGATATATTA CAATTGGTTT TATTTAATTT
    TTGTTCTTGT CTCATGACGT ATATGATTAT ATTTATATTA TAATTACATC
    AAAAGATATG AAATGAAGAA AATCATATGA TAGAATT

AT1G23074.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G23080.1

Model type
Protein coding
Short Description
Auxin efflux carrier family protein
Curator Summary
Encodes a novel component of auxin efflux that is located apically in the basal cell and is involved during embryogenesis in setting up the apical-basal axis in the embryo. It is also involved in pattern specification during root development. In roots, it is expressed at lateral and basal membranes of provascular cells in the meristem and elongation zone, whereas in the columella cells it coincides with the PIN3 domain. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. PINs are directly involved of in catalyzing cellular auxin efflux.
Computational Description
PIN-FORMED 7 (PIN7); FUNCTIONS IN: auxin:hydrogen symporter activity, transporter activity, auxin efflux transmembrane transporter activity; INVOLVED IN: response to cyclopentenone, root development, pattern specification process, auxin polar transport, longitudinal axis specification; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT1G70940.1); Has 1748 Blast hits to 1583 proteins in 451 species: Archae - 37; Bacteria - 919; Metazoa - 14; Fungi - 2; Plants - 486; Viruses - 0; Other Eukaryotes - 290 (source: NCBI BLink).
Link
InterPro Scan - TAIR