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16-0392-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2414952 [Map]; Strand: c
      • AT1G07795.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (3UTR)
      • AT1G07800.1 - [+] show detail - transposable element gene
        Distance: -89; Region: promoter
    Flanking Genome Sequence: 16-0392-1 - 3-prime edge 
    TTAAAACGGN AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCA 
    CGACCCAAAA TCACAACTAA ACAATTTGAC ATTCCGTTTT GCCATCGTCC 
    GGTTTTAAAT CACCATCAAA TTAGTAATTA GTCAAGTGAT CATGACAAAT 
    GCCGAGAGAT ACAGGAGACA TTTGTGTGAT TCTGAGGTTT GTCAGGTTTG 
    CAAAGGGAGA GTGGAGACTA TCTTGCATGT TCTTAGAGAC TGCCCTTCGA 
    TGTCGGGAAT ATGGAGCAGG ATTGTTCCTA GGAGGAAACA ACAAGCGTTC 
    TTTACGAAGT CATTATTTGA GTGGCTCTTT GAGAATCTCT GTGAGCAGGT 
    TAACGTGGAA GAGGGGCCTT GGTCCACGAT GTTTGCACTA ACAGTTTGGT 
    GGGGGTGGAA NTGGAGGTGC GGTGATATTT TTGGNGANAA TAGATGGTGT 
    NTGGACAGGG NNCGCTTTGT GAAGGANTCG GNNAANGAGG TNTCNCCNCC 
    TNGTCNTCAG TTNGTCCCCT CTNGGANGTN NTTGCTCTNN CNNNNAAATA 
    NCTTNTNGCG GTGGGGNANN NCNGNNTNTT NGNCNNGNTT CTTCCTNTTT 
    NNANCCGATC CGNCNTNTCC CAANGGGAAN TANNNTTGTN NANTCTNNTC 
    CANTANNATN GCGNAANAGA NATNNANNGC GNCGCANTTN NTTNNNNCNT 
    CTNTCANATT TTATANTNCA CANCTTNCNN NTTNNGTNGN GTCTNNCNGT 
    NGTTTTNNNT NTNCTCTTCN CNNTTNNNNA TNCCNGNTNT TCATNAGNNA 
    TGNCGCCTTC NNNCCNTNTC CNCNTTNCCC ATANNNTCCC NNCCNCNNTC

AT1G07795.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G28725.1); Has 38 Blast hits to 38 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G07800.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, similar to putative reverse transcriptase., blastp match of 24% identity and 5.3e-10 P-value to GP|21450442|gb|AAM54146.1|AC104616_5|AC104616 putative reverse transcriptase. {Oryza sativa (japonica cultivar-group)}
Link
InterPro Scan - TAIR