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16-0472-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 19729427 [Map]; Strand: w
      • AT3G53230.1 - [+] show detail - ATPase, AAA-type, CDC48 protein
        Distance: 2755; Region: intergenic
      • AT3G53232.1 - [+] show detail - ROTUNDIFOLIA like 1
        Distance: 1551; Region: intergenic
    Flanking Genome Sequence: 16-0472-1 - 5-prime edge 
    ATATGTACTA TCTATATTCA CGATCCAAAT ATTCAAATCG GACATAGATA 
    TTAAGATTCA GTATAACGCT CAAATCCTAC GAGTACCTGA CAAGTATCTA 
    TAATTACTTT AATGATTAAA TGTTTTGAAA ATAATAATCT AAATTTAATC 
    AGCGGTTGCG GCGTGTCGGA AAAGTTCGAG ACTTGGAGGA AGAGCATGCA 
    CGTGATGTTG AACGTTTAAG TTTGTTTGTT TTCTTGGCTT CGGATTCGTT 
    TTAAGTACTA TATAGTTTTA TAAGTGTAGT TGGGTCGTAT TTTTGAAGAT 
    ATCATGAATC TAATAAATTA GTGGTAACAC TGACTGCATT GGTCAAAACA 
    TAGTTGTACG TTACAAAATT TTCTTTACGT AACGTAACTA AATATCCTAT 
    TACATATATG CTTAACATAA TATATTGCAT TTGGACCCTT TAGACCATCG 
    CAATTTCTAT AATCTACATT TCAAAAGTGA ACAATATCAA AAGAGTTAAT 
    AACTTATTCA TTTTCGACTT TATAAGTATC TAATGGAAGA AAAACCAAGG 
    CGATAGTATC AAATGGAATT ATTATGCATG TACTAATATA TATTTTTCCT 
    ATGAACTTAA ATGTATTATT TAATACGAAT AAGAGAATGC TTTTTAGGAT 
    ACTATTATTT TCACTTATTT TCTTCATGGG NCGGACATTG AAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 19729351 [Map]; Strand: w
      • AT3G53230.1 - [+] show detail - ATPase, AAA-type, CDC48 protein
        Distance: 2679; Region: intergenic
      • AT3G53232.1 - [+] show detail - ROTUNDIFOLIA like 1
        Distance: 1627; Region: intergenic
    Flanking Genome Sequence: 16-0472-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCTATGT 
    TGAAAACCAA ATGTAGGTAA AAAAAACTAT GAGCCGACAA TGGGAATCGT 
    CGAGGCGAAA AAGGTGTGCA GATGCACTCG TGCGGTCCCT CCTCGTTACT 
    ATTATTCATC GTTTTCCCAC TACTGTTTGA TTTATTACTA CAGAACTCAG 
    AACATTATTT TCTCAATCTC TTTTCTTTTT CTTTTTAAGT GTATTTATTT 
    ATTTATGATG ATGGGATAAT TGAGAAACGT GACTTTCAAC TTTTTTCAGA 
    AAGGAAACTT GATTTGTATA AGTAGAAGTC AGCATCATTG ACGAAAGAGA 
    TGGGGGAAAA CATGGTTGGT CTCATAATTA TTGTCCCGAA CAGATTTTAA 
    GGAATT

AT3G53230.1

Model type
Protein coding
Short Description
ATPase, AAA-type, CDC48 protein
Computational Description
ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G53232.1

Model type
Protein coding
Short Description
ROTUNDIFOLIA like 1
Computational Description
ROTUNDIFOLIA like 1 (RTFL1); CONTAINS InterPro DOMAIN/s: DVL (InterPro:IPR012552); BEST Arabidopsis thaliana protein match is: DVL family protein (TAIR:AT2G36985.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR