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16-0499-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23189461 [Map]; Strand: c
      • AT3G62690.1 - [+] show detail - AtL5
        Distance: -2760; Region: intergenic
      • AT3G62700.1 - [+] show detail - multidrug resistance-associated protein 10
        Distance: 806; Region: intergenic
    Flanking Genome Sequence: 16-0499-1 - 5-prime edge 
    CTCTGAAGAA GCTAAAAGTT TATTATTGAT TTCATCATGT AATTTTCTAT 
    TGGTATCGCT TTGCCTTTCT GTTTGCTTAA AAGCAGGTAA GTGTTTATTA 
    TTGATTTTCC AATTTATTAA TTATTTTCAC ATTTTAAAAA TGAAAAATAA 
    AAACAAAAAA AATCCCAAAA AAAAAANACN GAAAAAGTTA ANGTNGAAAA 
    ATAAAAAAAA NNCNNTTTGA AAANGGGAAA TNAANGANCN GGCCNCAACT 
    TNTACCNAAG GGNANCTNCN CNGGCNGNNN CATNATTTAT TTNCAACTTT 
    CNCNCGGTNC CGTGGATNGN AAAANATNAA ANCTTNTNAA AGTTNACCCN 
    TTTNGNTTAA NCAAAANCNT NGAATTTGGN NAAANCCCNA NCTAATAATN 
    TGCNNNCNNN CNTTNAAAAN CNACAATTAN TCAGCTTACN CCCTAANNAC 
    CATTNTANCA TTTATNGGGN CCCTANCTAG CAGTNTTNTA AACGNNGNGA 
    AANACAAACT NTTAANCAAT NNAANGNTNT AAGGTTTTTT TNNNTTTTGA 
    ACCCNTTNAN CTTTTTCGGG AATNNNCANT TTTTCGTTCA ACCNCTTTTC 
    CAAAGGGGGN CTTTNANNNN NTNCCCNTTT NNNNGGCCNN NAAAAAACCC 
    CCCCCGCNTT AAAANAATTT TNGGGGGGGN AANCNGNAAG GGGNTTTTTT 
    TTTTNNAAAA GGGGGGAANC GGNTGGGAAN NGAANNCC

AT3G62690.1

Model type
Protein coding
Short Description
AtL5
Curator Summary
Encodes a RING-H2 zinc finger protein related to ATL2. The ATL gene family is represented by fifteen sequences that contain, in addition to the RING, a transmembrane domain which is located in most of them towards the N-terminal end.
Computational Description
AtL5 (ATL5); FUNCTIONS IN: zinc ion binding; INVOLVED IN: protein complex assembly; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G47560.1); Has 10661 Blast hits to 10636 proteins in 314 species: Archae - 0; Bacteria - 0; Metazoa - 2642; Fungi - 1094; Plants - 5229; Viruses - 125; Other Eukaryotes - 1571 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62700.1

Model type
Protein coding
Short Description
multidrug resistance-associated protein 10
Curator Summary
member of MRP subfamily
Computational Description
multidrug resistance-associated protein 10 (MRP10); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, plant-type vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: multidrug resistance-associated protein 4 (TAIR:AT2G47800.1); Has 708251 Blast hits to 364353 proteins in 4024 species: Archae - 13144; Bacteria - 571430; Metazoa - 13503; Fungi - 8752; Plants - 6721; Viruses - 16; Other Eukaryotes - 94685 (source: NCBI BLink).
Link
InterPro Scan - TAIR